1
vote
2
answers
598
views
2
answers
2
votes
1
answer
1.0k
views
1
answer
getSeq with GRanges object error: function not found
bsgenome biostrings granges written 3.8 years ago by Miskey, Csaba20 • updated 3.8 years ago by Martin Morgan ♦♦ 22k
3
votes
1
answer
763
views
1
answer
Granges and reference genome
granges written 3.8 years ago by Asma rabe290 • updated 3.8 years ago by Sean Davis21k
0
votes
3
answers
2.4k
views
3
answers
2
votes
1
answer
509
views
1
answer
Bioconductor utility with novel projects
iranges granges gff import.gff3 strand written 3.8 years ago by topher.hamm0 • updated 3.8 years ago by Hervé Pagès ♦♦ 13k
4
votes
2
answers
666
views
2
answers
Overlap the snps
iranges granges overlap snps written 3.8 years ago by anastasiya-terskih10 • updated 3.8 years ago by Michael Lawrence10k
10
votes
3
answers
5.8k
views
6 follow
3
answers
DESeq2: add annotations (from data frame) to DESeqDataSet
annotation deseq2 granges written 3.7 years ago by Darya Vanichkina100 • updated 2.5 years ago by bioprog0
0
votes
2
answers
1.8k
views
2
answers
10
votes
3
answers
6.2k
views
3
answers
How to properly sort GRanges?
genomicranges granges seqnames sort order written 3.7 years ago by enricoferrero570 • updated 3.3 years ago by yinghua30
0
votes
2
answers
507
views
2
answers
"for loop" and AUTOPLOT function
ggbio granges written 3.6 years ago by Bogdan490
1
vote
2
answers
1.1k
views
2
answers
about appending GRANGES
granges written 3.6 years ago by Bogdan490
4
votes
1
answer
914
views
1
answer
Combine two GRanges to a single GRangesList
genomicranges granges grangeslist written 3.6 years ago by Sean Davis21k • updated 3.6 years ago by Martin Morgan ♦♦ 22k
2
votes
1
answer
638
views
1
answer
DiffBind individual sample concentrations for differentially bound sites
diffbind granges written 3.6 years ago by igor20 • updated 3.6 years ago by Rory Stark2.5k
0
votes
0
answers
613
views
0
answers
8
votes
2
answers
1.2k
views
2
answers
import wig to coverage
rtracklayer granges import.wig written 3.5 years ago by liz.ingsimmons120 • updated 3.4 years ago by Hervé Pagès ♦♦ 13k
4
votes
1
answer
520
views
1
answer
stacking (partially or completely overlapping) GRanges/IRanges
rnaseq iranges granges written 3.5 years ago by Johannes Rainer1.3k • updated 3.5 years ago by Martin Morgan ♦♦ 22k
1
vote
1
answer
546
views
1
answer
Conversion of BSgenome format to GRanges format?
bsgenome granges bam written 3.4 years ago by pterry0 • updated 3.4 years ago by James W. MacDonald46k
10
votes
3
answers
1.2k
views
6 follow
3
answers
Transitive overlaps of GRanges object
granges findoverlaps written 3.4 years ago by Stefanie Tauber40 • updated 3.4 years ago by Hervé Pagès ♦♦ 13k
3
votes
1
answer
1.4k
views
1
answer
2
votes
1
answer
820
views
1
answer
Editing of GAlignments
rsamtools granges bioconductor written 3.4 years ago by gen30 • updated 3.4 years ago by Martin Morgan ♦♦ 22k
0
votes
0
answers
447
views
0
answers
2
votes
1
answer
1.1k
views
1
answer
Shrink or Expand RLE
coverage iranges granges rle written 3.3 years ago by gen30 • updated 3.3 years ago by Martin Morgan ♦♦ 22k
2
votes
1
answer
475
views
1
answer
Calling coverage on GRanges object yields small negative values
coverage granges written 3.3 years ago by Anya10 • updated 3.3 years ago by Hervé Pagès ♦♦ 13k
2
votes
2
answers
3.1k
views
2
answers
3
votes
2
answers
507
views
2
answers
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