22
votes
2
answers
4.0k
views
5 follow
2
answers
28
votes
4
answers
1.9k
views
10 follow
4
answers
9
votes
3
answers
5.0k
views
6 follow
3
answers
DESeq2: add annotations (from data frame) to DESeqDataSet
annotation deseq2 granges written 3.5 years ago by Darya Vanichkina90 • updated 2.3 years ago by bioprog0
8
votes
2
answers
1.1k
views
2
answers
import wig to coverage
rtracklayer granges import.wig written 3.2 years ago by liz.ingsimmons120 • updated 3.2 years ago by Hervé Pagès ♦♦ 13k
4
votes
1
answer
501
views
1
answer
stacking (partially or completely overlapping) GRanges/IRanges
rnaseq iranges granges written 3.2 years ago by Johannes Rainer1.2k • updated 3.2 years ago by Martin Morgan ♦♦ 21k
10
votes
3
answers
1.1k
views
6 follow
3
answers
Transitive overlaps of GRanges object
granges findoverlaps written 3.2 years ago by Stefanie Tauber40 • updated 3.2 years ago by Hervé Pagès ♦♦ 13k
4
votes
1
answer
632
views
1
answer
8
votes
4
answers
464
views
4
answers
Combining two GRangesLists
granges grangeslist written 17 months ago by llevar20 • updated 17 months ago by Martin Morgan ♦♦ 21k
2
votes
1
answer
963
views
1
answer
getSeq with GRanges object error: function not found
bsgenome biostrings granges written 3.6 years ago by Miskey, Csaba20 • updated 3.6 years ago by Martin Morgan ♦♦ 21k
3
votes
1
answer
703
views
1
answer
Granges and reference genome
granges written 3.6 years ago by Asma rabe290 • updated 3.6 years ago by Sean Davis21k
4
votes
2
answers
607
views
2
answers
Overlap the snps
iranges granges overlap snps written 3.5 years ago by anastasiya-terskih10 • updated 3.5 years ago by Michael Lawrence10.0k
4
votes
1
answer
805
views
1
answer
Combine two GRanges to a single GRangesList
genomicranges granges grangeslist written 3.4 years ago by Sean Davis21k • updated 3.4 years ago by Martin Morgan ♦♦ 21k
2
votes
1
answer
758
views
1
answer
Editing of GAlignments
rsamtools granges bioconductor written 3.2 years ago by gen30 • updated 3.2 years ago by Martin Morgan ♦♦ 21k
2
votes
1
answer
449
views
1
answer
Calling coverage on GRanges object yields small negative values
coverage granges written 3.0 years ago by Anya10 • updated 3.0 years ago by Hervé Pagès ♦♦ 13k
3
votes
2
answers
465
views
2
answers
2
votes
1
answer
744
views
1
answer
From a GRanges object to a GRangeList
granges grangeslist written 2.9 years ago by Patrick Schorderet20 • updated 2.9 years ago by James W. MacDonald46k
4
votes
1
answer
503
views
1
answer
Slice of aligned sequences
genomicalignments granges bam written 2.8 years ago by Thomas Poulsen10 • updated 2.8 years ago by Hervé Pagès ♦♦ 13k
2
votes
2
answers
1.9k
views
2
answers
7
votes
1
answer
743
views
1
answer
how to extract Granges not overlapping with other ganges?
granges findoverlaps written 2.5 years ago by vinod.acear20 • updated 2.5 years ago by James W. MacDonald46k
5
votes
2
answers
1.8k
views
2
answers
8
votes
2
answers
494
views
6 follow
2
answers
4
votes
1
answer
302
views
1
answer
Get internal exons using GenomicFeatures
genomicfeatures granges written 23 months ago by geparada8810 • updated 23 months ago by Michael Lawrence10.0k
6
votes
1
answer
2.0k
views
1
answer
3
votes
1
answer
426
views
1
answer
find next non-overlapping nth elements of a given region
biomart granges findoverlaps written 22 months ago by alessandro.pastore20 • updated 22 months ago by Michael Lawrence10.0k
4
votes
1
answer
342
views
1
answer
trying to annotate overlaps with external file information
iranges granges written 11 months ago by chrisclarkson10030 • updated 11 months ago by Michael Lawrence10.0k
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