22
votes
2
answers
4.7k
views
5 follow
2
answers
28
votes
4
answers
2.4k
views
10 follow
4
answers
10
votes
3
answers
6.5k
views
6 follow
3
answers
DESeq2: add annotations (from data frame) to DESeqDataSet
annotation deseq2 granges written 4.0 years ago by Darya Vanichkina100 • updated 2.8 years ago by bioprog0
8
votes
2
answers
1.2k
views
2
answers
import wig to coverage
rtracklayer granges import.wig written 3.7 years ago by liz.ingsimmons120 • updated 3.7 years ago by Hervé Pagès ♦♦ 13k
4
votes
1
answer
558
views
1
answer
stacking (partially or completely overlapping) GRanges/IRanges
rnaseq iranges granges written 3.7 years ago by Johannes Rainer1.3k • updated 3.7 years ago by Martin Morgan ♦♦ 22k
10
votes
3
answers
1.2k
views
6 follow
3
answers
Transitive overlaps of GRanges object
granges findoverlaps written 3.7 years ago by Stefanie Tauber40 • updated 3.7 years ago by Hervé Pagès ♦♦ 13k
5
votes
2
answers
2.5k
views
2
answers
4
votes
1
answer
739
views
1
answer
8
votes
4
answers
915
views
4
answers
Combining two GRangesLists
granges grangeslist written 23 months ago by llevar20 • updated 23 months ago by Martin Morgan ♦♦ 22k
2
votes
1
answer
1.1k
views
1
answer
getSeq with GRanges object error: function not found
bsgenome biostrings granges written 4.1 years ago by Miskey, Csaba20 • updated 4.1 years ago by Martin Morgan ♦♦ 22k
3
votes
1
answer
831
views
1
answer
Granges and reference genome
granges written 4.1 years ago by Asma rabe290 • updated 4.1 years ago by Sean Davis21k
4
votes
2
answers
725
views
2
answers
Overlap the snps
iranges granges overlap snps written 4.0 years ago by anastasiya-terskih10 • updated 4.0 years ago by Michael Lawrence10k
3
votes
2
answers
1.9k
views
2
answers
4
votes
1
answer
1.0k
views
1
answer
Combine two GRanges to a single GRangesList
genomicranges granges grangeslist written 3.9 years ago by Sean Davis21k • updated 3.9 years ago by Martin Morgan ♦♦ 22k
2
votes
1
answer
870
views
1
answer
Editing of GAlignments
rsamtools granges bioconductor written 3.7 years ago by gen30 • updated 3.7 years ago by Martin Morgan ♦♦ 22k
5
votes
1
answer
520
views
1
answer
Calling coverage on GRanges object yields small negative values
coverage granges written 3.5 years ago by Anya10 • updated 3.5 years ago by Hervé Pagès ♦♦ 13k
3
votes
2
answers
533
views
2
answers
2
votes
1
answer
910
views
1
answer
From a GRanges object to a GRangeList
granges grangeslist written 3.4 years ago by Patrick Schorderet20 • updated 3.4 years ago by James W. MacDonald48k
4
votes
1
answer
569
views
1
answer
Slice of aligned sequences
genomicalignments granges bam written 3.3 years ago by Thomas Poulsen10 • updated 3.3 years ago by Hervé Pagès ♦♦ 13k
7
votes
1
answer
989
views
1
answer
how to extract Granges not overlapping with other ganges?
granges findoverlaps written 3.0 years ago by vinod.acear30 • updated 3.0 years ago by James W. MacDonald48k
5
votes
2
answers
2.3k
views
2
answers
8
votes
2
answers
646
views
6 follow
2
answers
4
votes
1
answer
357
views
1
answer
Get internal exons using GenomicFeatures
genomicfeatures granges written 2.5 years ago by geparada8810 • updated 2.5 years ago by Michael Lawrence10k
8
votes
1
answer
2.7k
views
1
answer
3
votes
1
answer
510
views
1
answer
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