Showing: granges • reset
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28
votes
4
answers
3.6k
views
10 follow
4
answers
Find overlap for more than 2 GRanges object simultaneously (reproducible example is updated) ?
granges findoverlaps written 3.8 years ago by Jurat Shahidin • 70 • updated 3.7 years ago by Martin Morgan ♦♦ 24k
8
votes
4
answers
2.5k
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4
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Combining two GRangesLists
granges grangeslist written 3.1 years ago by llevar • 20 • updated 3.1 years ago by Martin Morgan ♦♦ 24k
0
votes
3
answers
3.4k
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3
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GRanges: problem with multiple seqnames and seqlengths
iranges granges seqnames seqlengths written 5.2 years ago by topher.hamm • 0
10
votes
3
answers
8.9k
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6 follow
3
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DESeq2: add annotations (from data frame) to DESeqDataSet
annotation deseq2 granges written 5.1 years ago by Darya Vanichkina • 110 • updated 3.9 years ago by bioprog • 0
12
votes
3
answers
8.8k
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3
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How to properly sort GRanges?
genomicranges granges seqnames sort order written 5.1 years ago by enricoferrero • 570 • updated 4.7 years ago by yinghua • 30
10
votes
3
answers
1.5k
views
6 follow
3
answers
Transitive overlaps of GRanges object
granges findoverlaps written 4.8 years ago by Stefanie Tauber • 40 • updated 4.8 years ago by Hervé Pagès ♦♦ 14k
3
votes
3
answers
4.1k
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3
answers
Non overlapping granges (or opposite of subsetByOverlaps)
iranges genomicranges granges subsetbyoverlaps written 4.2 years ago by vinod.acear • 40 • updated 12 months ago by doublehelix31 • 0
0
votes
3
answers
545
views
3
answers
View of subsequences corresponding granges on +ve strand and rev. complementary of seq on -ve strand.
iranges granges grangeslist views written 4.2 years ago by vinod.acear • 40 • updated 4.2 years ago by Hervé Pagès ♦♦ 14k
5
votes
3
answers
3.7k
views
3
answers
How to remove out of bound rows from granges
granges grangeslist written 4.2 years ago by vinod.acear • 40 • updated 4 months ago by balwierz • 40
2
votes
3
answers
1.8k
views
3
answers
Extract three types of intergenic regions
annotation iranges granges views written 4.1 years ago by vinod.acear • 40 • updated 4.1 years ago by Thomas Girke • 1.7k
4
votes
3
answers
847
views
3
answers
closest-features equivalent in Bioconductor for finding closest gene(s)
iranges genomicranges granges annotatepeak written 3.6 years ago by Dimitris Polychronopoulos • 50 • updated 3.6 years ago by Michael Lawrence ♦ 11k
6
votes
3
answers
585
views
3
answers
Aggregate read counts by non-uniform overlapping sliding windows
genomicranges granges featurecounts written 2.9 years ago by s1437643 • 10 • updated 2.9 years ago by Michael Lawrence ♦ 11k
4
votes
3
answers
384
views
3
answers
the closest gene to a breakpoint
granges plyranges written 15 months ago by Bogdan • 580 • updated 15 months ago by Gordon Smyth ♦ 39k
3
votes
3
answers
312
views
3
answers
mclapply to loop over a GRangesList object
genomicranges granges grangeslist parallel mclapply written 10 months ago by foehn • 60
3
votes
3
answers
373
views
3
answers
Extract metadata from GRanges object for every genomic coordinate
genomicranges granges written 5 months ago by Robert • 10
1
vote
2
answers
770
views
2
answers
Coerce several Granges objects to a GrangeList
granges grangeslist chip written 5.2 years ago by patrick.schordert • 30
4
votes
2
answers
1.0k
views
2
answers
Overlap the snps
iranges granges overlap snps written 5.2 years ago by anastasiya-terskih • 10 • updated 5.2 years ago by Michael Lawrence ♦ 11k
3
votes
2
answers
2.5k
views
2
answers
GRanges returning warning message: 'ranges' contains values outside of sequence bounds.
granges written 5.1 years ago by piotr.grabowski • 10 • updated 5.0 years ago by Hervé Pagès ♦♦ 14k
0
votes
2
answers
685
views
2
answers
"for loop" and AUTOPLOT function
ggbio granges written 5.0 years ago by Bogdan • 580
1
vote
2
answers
1.9k
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2
answers
about appending GRANGES
granges written 5.0 years ago by Bogdan • 580
8
votes
2
answers
1.6k
views
2
answers
import wig to coverage
rtracklayer granges import.wig written 4.9 years ago by liz.ingsimmons • 140 • updated 4.9 years ago by Hervé Pagès ♦♦ 14k
2
votes
2
answers
5.1k
views
2
answers
GRanges - changing seqlevels
seqlevels granges written 4.6 years ago by Hermann Norpois • 170
3
votes
2
answers
687
views
2
answers
gene model generation support?
genomicfeatures granges gene models written 4.6 years ago by Vincent J. Carey, Jr. ♦ 6.3k
2
votes
2
answers
929
views
2
answers
Intersecting a Granges and a GRangesList using within
granges grangeslist findoverlaps written 4.3 years ago by d r • 150 • updated 4.2 years ago by Hervé Pagès ♦♦ 14k
2
votes
2
answers
1.4k
views
2
answers
ggbio circular plot
snp ggbio granges written 4.0 years ago by Marcin Grzybowski • 0 • updated 4.0 years ago by Michael Lawrence ♦ 11k
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