Showing: grangesreset
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getSeq with GRanges object error: function not found
bsgenome biostrings granges written 5.2 years ago by Miskey, Csaba20 • updated 5.2 years ago by Martin Morgan ♦♦ 24k
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Granges and reference genome
granges written 5.2 years ago by Asma rabe290 • updated 5.2 years ago by Sean Davis21k
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3
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Bioconductor utility with novel projects
iranges granges gff import.gff3 strand written 5.2 years ago by topher.hamm0 • updated 5.2 years ago by Hervé Pagès ♦♦ 14k
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Overlap the snps
iranges granges overlap snps written 5.2 years ago by anastasiya-terskih10 • updated 5.2 years ago by Michael Lawrence11k
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6 follow
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DESeq2: add annotations (from data frame) to DESeqDataSet
annotation deseq2 granges written 5.1 years ago by Darya Vanichkina110 • updated 3.9 years ago by bioprog0
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How to properly sort GRanges?
genomicranges granges seqnames sort order written 5.1 years ago by enricoferrero570 • updated 4.7 years ago by yinghua30
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"for loop" and AUTOPLOT function
ggbio granges written 5.0 years ago by Bogdan580
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about appending GRANGES
granges written 5.0 years ago by Bogdan580
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Combine two GRanges to a single GRangesList
genomicranges granges grangeslist written 5.0 years ago by Sean Davis21k • updated 5.0 years ago by Martin Morgan ♦♦ 24k
2
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1
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802
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DiffBind individual sample concentrations for differentially bound sites
diffbind granges written 5.0 years ago by igor30 • updated 5.0 years ago by Rory Stark3.0k
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import wig to coverage
rtracklayer granges import.wig written 4.9 years ago by liz.ingsimmons140 • updated 4.8 years ago by Hervé Pagès ♦♦ 14k
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stacking (partially or completely overlapping) GRanges/IRanges
rnaseq iranges granges written 4.9 years ago by Johannes Rainer1.5k • updated 4.8 years ago by Martin Morgan ♦♦ 24k
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Conversion of BSgenome format to GRanges format?
bsgenome granges bam written 4.8 years ago by pterry0 • updated 4.8 years ago by James W. MacDonald52k
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6 follow
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Transitive overlaps of GRanges object
granges findoverlaps written 4.8 years ago by Stefanie Tauber40 • updated 4.8 years ago by Hervé Pagès ♦♦ 14k
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Editing of GAlignments
rsamtools granges bioconductor written 4.8 years ago by gen30 • updated 4.8 years ago by Martin Morgan ♦♦ 24k
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Shrink or Expand RLE
coverage iranges granges rle written 4.7 years ago by gen30 • updated 4.7 years ago by Martin Morgan ♦♦ 24k
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Calling coverage on GRanges object yields small negative values
coverage granges written 4.7 years ago by Anya10 • updated 4.7 years ago by Hervé Pagès ♦♦ 14k
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