Showing: gseareset
4
votes
1
answer
615
views
1
answer
GSEA using clusterprofileR
clusterprofiler gsea written 2.0 years ago by sup23030 • updated 2.0 years ago by assaron150
0
votes
0
answers
352
views
0
answers
0
votes
1
answer
487
views
1
answer
1
vote
1
answer
473
views
1
answer
two-color microarray - Gene Set Enrichment Analysis
gsea twocolor microarray written 2.1 years ago by Sanches0 • updated 2.1 years ago by Gordon Smyth38k
2
votes
0
answers
1.0k
views
0
answers
2
votes
1
answer
1.5k
views
1
answer
Intepretation of Z scores for gene set enrichment analysis in MAST
gsea scrna mast written 2.2 years ago by siajunren0 • updated 2.2 years ago by Andrew_McDavid190
1
vote
1
answer
770
views
1
answer
FGSEA only runs with <1000 permutations
gsea fgsea written 2.2 years ago by shawn.w.foley0 • updated 2.2 years ago by assaron150
0
votes
0
answers
561
views
0
answers
GSEA threshold question
clusterprofiler R gsea reactomepa written 2.4 years ago by bhgyu30
0
votes
1
answer
763
views
1
answer
GAGE or GSEABase using expression data and pathway.gmt file for mouse
pathways gage R gsea written 2.5 years ago by snishtala030 • updated 2.5 years ago by Luo Weijun1.5k
1
vote
1
answer
520
views
1
answer
0
votes
1
answer
829
views
1
answer
topGO - treating up- and down-regulated genes separately
topgo pathway analysis gsea written 2.6 years ago by predeus0 • updated 2.6 years ago by Lluís Revilla Sancho510
1
vote
2
answers
1.1k
views
2
answers
how to perform pre ranked GSEA in R?
microarray statistics R gsea written 4.6 years ago by Nemo80 • updated 2.6 years ago by predeus0
2
votes
1
answer
671
views
1
answer
0
votes
1
answer
817
views
1
answer
Statistic for GSA
gsea gsa concept written 2.7 years ago by Lluís Revilla Sancho510 • updated 2.7 years ago by Pekka Kohonen190
2
votes
1
answer
602
views
1
answer
Direction aware fgsea test
gsea fgsea written 2.8 years ago by rubi90 • updated 2.8 years ago by assaron150
1
vote
4
answers
765
views
4
answers
GO slim data for GAGE GSEA analysis
go gage gsea written 3.1 years ago by rubi90 • updated 2.9 years ago by Guangchuang Yu1.1k
0
votes
1
answer
725
views
1
answer
0
votes
1
answer
751
views
1
answer
ClusterProfiler can't load gmt file
clusterprofiler gsea gmt written 3.2 years ago by sarah.blackstone77340 • updated 3.2 years ago by Guangchuang Yu1.1k
2
votes
1
answer
3.4k
views
1
answer
GSEA preranked analysis downstream of DEseq2
rnaseq deseq2 gsea written 3.2 years ago by EJ0 • updated 3.2 years ago by Michael Love25k
9
votes
3
answers
2.6k
views
3
answers
GSEA-like enrichment score calculation
gseabase gsea enrichment analysis written 3.3 years ago by Matthias Z.20 • updated 3.3 years ago by Gordon Smyth38k
0
votes
4
answers
736
views
4
answers
Gage and setp argument
gage gsea written 3.4 years ago by peter.chernek0
1
vote
0
answers
650
views
0
answers
0
votes
3
answers
828
views
3
answers
gene set (enrichment) analysis
gsea gsa written 3.6 years ago by Bogdan580 • updated 3.6 years ago by Axel Klenk940
2
votes
2
answers
680
views
2
answers
1
vote
1
answer
510
views
1
answer
giving weight to DEG from limma output
limma gsea written 3.6 years ago by Shamim Sarhadi20 • updated 3.6 years ago by Aaron Lun25k
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