0
votes
4
answers
423
views
4
answers
Gage and setp argument
gage gsea written 20 months ago by peter.chernek0
1
vote
4
answers
406
views
4
answers
GO slim data for GAGE GSEA analysis
go gage gsea written 17 months ago by rubi80 • updated 14 months ago by Guangchuang Yu870
0
votes
3
answers
462
views
3
answers
gene set (enrichment) analysis
gsea gsa written 22 months ago by Bogdan480 • updated 22 months ago by Axel Klenk830
9
votes
3
answers
1.0k
views
3
answers
GSEA-like enrichment score calculation
gseabase gsea enrichment analysis written 19 months ago by Matthias Z.20 • updated 19 months ago by Gordon Smyth32k
8
votes
2
answers
2.0k
views
2
answers
Gene set enrichment analysis
topgo gseabase gostat gsea written 3.1 years ago by kaushal Raj Chaudhary10 • updated 3.1 years ago by Levi Waldron390
1
vote
2
answers
639
views
2
answers
how to perform pre ranked GSEA in R?
microarray statistics R gsea written 2.9 years ago by Nemo60 • updated 10 months ago by predeus0
13
votes
2
answers
1.4k
views
2
answers
Best method/package for Gene Set Enrichment Analysis in microarrays?
gostats topgo goseq gsea gega written 2.2 years ago by jacorvar40 • updated 2.2 years ago by Robert Castelo2.1k
2
votes
2
answers
731
views
6 follow
2
answers
Arguments for camera (gene set analysis)
camera gsea written 22 months ago by claire.n.levy10 • updated 22 months ago by Steve Lianoglou12k
2
votes
2
answers
381
views
2
answers
0
votes
1
answer
801
views
1
answer
Gene set enrichment analysis with gage package returning NaN p-values
rnaseq gage gsea written 2.8 years ago by Tom0 • updated 2.7 years ago by Luo Weijun1.4k
5
votes
1
answer
843
views
1
answer
1
vote
1
answer
345
views
1
answer
giving weight to DEG from limma output
limma gsea written 22 months ago by Shamim Sarhadi20 • updated 22 months ago by Aaron Lun18k
1
vote
1
answer
1.1k
views
1
answer
GSEA preranked analysis downstream of DEseq2
rnaseq deseq2 gsea written 17 months ago by EJ0 • updated 17 months ago by Michael Love15k
0
votes
1
answer
333
views
1
answer
ClusterProfiler can't load gmt file
clusterprofiler gsea gmt written 17 months ago by sarah.blackstone77340 • updated 17 months ago by Guangchuang Yu870
0
votes
1
answer
359
views
1
answer
2
votes
1
answer
332
views
1
answer
2
votes
1
answer
286
views
1
answer
Direction aware fgsea test
gsea fgsea written 12 months ago by rubi80 • updated 12 months ago by assaron140
0
votes
1
answer
353
views
1
answer
Statistic for GSA
gsea gsa concept written 11 months ago by Lluís R310 • updated 11 months ago by Pekka Kohonen190
0
votes
1
answer
294
views
1
answer
topGO - treating up- and down-regulated genes separately
topgo pathway analysis gsea written 10 months ago by predeus0 • updated 10 months ago by Lluís R310
1
vote
1
answer
240
views
1
answer
0
votes
1
answer
274
views
1
answer
GAGE or GSEABase using expression data and pathway.gmt file for mouse
pathways gage R gsea written 8 months ago by snishtala030 • updated 8 months ago by Luo Weijun1.4k
1
vote
1
answer
382
views
1
answer
FGSEA only runs with <1000 permutations
gsea fgsea written 5 months ago by shawn.w.foley0 • updated 5 months ago by assaron140
0
votes
1
answer
628
views
1
answer
Intepretation of Z scores for gene set enrichment analysis in MAST
gsea scrna mast written 5 months ago by siajunren0 • updated 5 months ago by Andrew_McDavid90
1
vote
1
answer
273
views
1
answer
two-color microarray - Gene Set Enrichment Analysis
gsea twocolor microarray written 4 months ago by Sanches0 • updated 4 months ago by Gordon Smyth32k
0
votes
1
answer
180
views
1
answer
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