0
votes
4
answers
466
views
4
answers
Gage and setp argument
gage gsea written 23 months ago by peter.chernek0
1
vote
4
answers
459
views
4
answers
GO slim data for GAGE GSEA analysis
go gage gsea written 20 months ago by rubi90 • updated 17 months ago by Guangchuang Yu960
0
votes
3
answers
531
views
3
answers
gene set (enrichment) analysis
gsea gsa written 2.1 years ago by Bogdan480 • updated 2.1 years ago by Axel Klenk830
9
votes
3
answers
1.3k
views
3
answers
GSEA-like enrichment score calculation
gseabase gsea enrichment analysis written 22 months ago by Matthias Z.20 • updated 22 months ago by Gordon Smyth33k
8
votes
2
answers
2.2k
views
2
answers
Gene set enrichment analysis
topgo gseabase gostat gsea written 3.4 years ago by kaushal Raj Chaudhary10 • updated 3.4 years ago by Levi Waldron410
1
vote
2
answers
710
views
2
answers
how to perform pre ranked GSEA in R?
microarray statistics R gsea written 3.1 years ago by Nemo60 • updated 13 months ago by predeus0
13
votes
2
answers
1.6k
views
2
answers
Best method/package for Gene Set Enrichment Analysis in microarrays?
gostats topgo goseq gsea gega written 2.4 years ago by jacorvar40 • updated 2.4 years ago by Robert Castelo2.1k
2
votes
2
answers
856
views
6 follow
2
answers
Arguments for camera (gene set analysis)
camera gsea written 2.1 years ago by claire.n.levy10 • updated 2.1 years ago by Steve Lianoglou12k
2
votes
2
answers
438
views
2
answers
1
vote
2
answers
145
views
2
answers
GSVA for single sample
gsva gsea ssgsea written 10 weeks ago by jaison750
0
votes
1
answer
868
views
1
answer
Gene set enrichment analysis with gage package returning NaN p-values
rnaseq gage gsea written 3.0 years ago by Tom0 • updated 3.0 years ago by Luo Weijun1.4k
5
votes
1
answer
890
views
1
answer
1
vote
1
answer
364
views
1
answer
giving weight to DEG from limma output
limma gsea written 2.1 years ago by Shamim Sarhadi20 • updated 2.1 years ago by Aaron Lun19k
1
vote
1
answer
1.4k
views
1
answer
GSEA preranked analysis downstream of DEseq2
rnaseq deseq2 gsea written 20 months ago by EJ0 • updated 20 months ago by Michael Love17k
0
votes
1
answer
405
views
1
answer
ClusterProfiler can't load gmt file
clusterprofiler gsea gmt written 20 months ago by sarah.blackstone77340 • updated 20 months ago by Guangchuang Yu960
0
votes
1
answer
412
views
1
answer
2
votes
1
answer
372
views
1
answer
2
votes
1
answer
345
views
1
answer
Direction aware fgsea test
gsea fgsea written 15 months ago by rubi90 • updated 15 months ago by assaron140
0
votes
1
answer
425
views
1
answer
Statistic for GSA
gsea gsa concept written 14 months ago by Lluís R310 • updated 14 months ago by Pekka Kohonen190
0
votes
1
answer
365
views
1
answer
topGO - treating up- and down-regulated genes separately
topgo pathway analysis gsea written 13 months ago by predeus0 • updated 13 months ago by Lluís R310
1
vote
1
answer
288
views
1
answer
0
votes
1
answer
357
views
1
answer
GAGE or GSEABase using expression data and pathway.gmt file for mouse
pathways gage R gsea written 11 months ago by snishtala030 • updated 11 months ago by Luo Weijun1.4k
1
vote
1
answer
437
views
1
answer
FGSEA only runs with <1000 permutations
gsea fgsea written 8 months ago by shawn.w.foley0 • updated 8 months ago by assaron140
0
votes
1
answer
716
views
1
answer
Intepretation of Z scores for gene set enrichment analysis in MAST
gsea scrna mast written 8 months ago by siajunren0 • updated 8 months ago by Andrew_McDavid100
1
vote
1
answer
301
views
1
answer
two-color microarray - Gene Set Enrichment Analysis
gsea twocolor microarray written 7 months ago by Sanches0 • updated 7 months ago by Gordon Smyth33k
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