0
votes
4
answers
548
views
4
answers
Gage and setp argument
gage gsea written 2.4 years ago by peter.chernek0
1
vote
4
answers
543
views
4
answers
GO slim data for GAGE GSEA analysis
go gage gsea written 2.1 years ago by rubi90 • updated 23 months ago by Guangchuang Yu1.0k
0
votes
3
answers
654
views
3
answers
gene set (enrichment) analysis
gsea gsa written 2.6 years ago by Bogdan520 • updated 2.6 years ago by Axel Klenk920
9
votes
3
answers
1.8k
views
3
answers
GSEA-like enrichment score calculation
gseabase gsea enrichment analysis written 2.3 years ago by Matthias Z.20 • updated 2.3 years ago by Gordon Smyth35k
8
votes
2
answers
2.5k
views
2
answers
Gene set enrichment analysis
topgo gseabase gostat gsea written 3.9 years ago by kaushal Raj Chaudhary10 • updated 3.9 years ago by Levi Waldron720
1
vote
2
answers
872
views
2
answers
how to perform pre ranked GSEA in R?
microarray statistics R gsea written 3.6 years ago by Nemo80 • updated 19 months ago by predeus0
13
votes
2
answers
1.8k
views
2
answers
Best method/package for Gene Set Enrichment Analysis in microarrays?
gostats topgo goseq gsea gega written 2.9 years ago by jacorvar40 • updated 2.9 years ago by Robert Castelo2.2k
2
votes
2
answers
1.2k
views
6 follow
2
answers
Arguments for camera (gene set analysis)
camera gsea written 2.6 years ago by claire.n.levy10 • updated 2.6 years ago by Steve Lianoglou12k
2
votes
2
answers
535
views
2
answers
1
vote
2
answers
219
views
2
answers
GSVA for single sample
gsva gsea ssgsea written 8 months ago by jaison750
0
votes
2
answers
110
views
2
answers
Issues in generating workable rank file for GSEA
gseabase deseq2 gsea pre-ranked gsea written 3 months ago by csijst0 • updated 3 months ago by Michael Love19k
0
votes
1
answer
975
views
1
answer
Gene set enrichment analysis with gage package returning NaN p-values
rnaseq gage gsea written 3.5 years ago by Tom0 • updated 3.5 years ago by Luo Weijun1.4k
5
votes
1
answer
982
views
1
answer
1
vote
1
answer
407
views
1
answer
giving weight to DEG from limma output
limma gsea written 2.6 years ago by Shamim Sarhadi20 • updated 2.6 years ago by Aaron Lun21k
1
vote
1
answer
2.1k
views
1
answer
GSEA preranked analysis downstream of DEseq2
rnaseq deseq2 gsea written 2.2 years ago by EJ0 • updated 2.2 years ago by Michael Love19k
0
votes
1
answer
528
views
1
answer
ClusterProfiler can't load gmt file
clusterprofiler gsea gmt written 2.2 years ago by sarah.blackstone77340 • updated 2.2 years ago by Guangchuang Yu1.0k
0
votes
1
answer
536
views
1
answer
2
votes
1
answer
483
views
1
answer
2
votes
1
answer
436
views
1
answer
Direction aware fgsea test
gsea fgsea written 21 months ago by rubi90 • updated 21 months ago by assaron150
0
votes
1
answer
569
views
1
answer
Statistic for GSA
gsea gsa concept written 20 months ago by Lluís R370 • updated 20 months ago by Pekka Kohonen190
0
votes
1
answer
516
views
1
answer
topGO - treating up- and down-regulated genes separately
topgo pathway analysis gsea written 19 months ago by predeus0 • updated 19 months ago by Lluís R370
1
vote
1
answer
373
views
1
answer
0
votes
1
answer
495
views
1
answer
GAGE or GSEABase using expression data and pathway.gmt file for mouse
pathways gage R gsea written 17 months ago by snishtala030 • updated 17 months ago by Luo Weijun1.4k
1
vote
1
answer
553
views
1
answer
FGSEA only runs with <1000 permutations
gsea fgsea written 14 months ago by shawn.w.foley0 • updated 14 months ago by assaron150
2
votes
1
answer
965
views
1
answer
Intepretation of Z scores for gene set enrichment analysis in MAST
gsea scrna mast written 14 months ago by siajunren0 • updated 14 months ago by Andrew_McDavid150
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