0
votes
0
answers
36
views
0
answers
1
vote
1
answer
144
views
1
answer
GSEA for RNA-seq analysis
limma gsea ttest preranked gsea written 5 weeks ago by imalumberjack0 • updated 5 weeks ago by Gordon Smyth35k
0
votes
0
answers
57
views
0
answers
0
votes
0
answers
82
views
0
answers
0
votes
2
answers
100
views
2
answers
Issues in generating workable rank file for GSEA
gseabase deseq2 gsea pre-ranked gsea written 3 months ago by csijst0 • updated 3 months ago by Michael Love19k
1
vote
0
answers
148
views
0
answers
1
vote
1
answer
129
views
1
answer
Where is it possible to find gene sets in rdata format for GSEA ?
rattus norvegicus gsea written 4 months ago by Aurora10 • updated 4 months ago by Gordon Smyth35k
2
votes
1
answer
313
views
1
answer
Clusterprofiler - MSigDB gene set analysis - Updated
clusterprofiler gsea msigdb written 6 months ago by thomasjenner3330 • updated 6 months ago by Guangchuang Yu1.0k
1
vote
2
answers
206
views
2
answers
GSVA for single sample
gsva gsea ssgsea written 7 months ago by jaison750
0
votes
1
answer
238
views
1
answer
merging gseaResult objects
clusterprofiler gsea written 7 months ago by robmarin0 • updated 7 months ago by Guangchuang Yu1.0k
1
vote
0
answers
242
views
0
answers
0
votes
0
answers
200
views
0
answers
0
votes
0
answers
308
views
0
answers
2
votes
1
answer
679
views
1
answer
2
votes
1
answer
334
views
1
answer
GSEA using clusterprofileR
clusterprofiler gsea written 11 months ago by sup23010 • updated 11 months ago by assaron150
0
votes
0
answers
203
views
0
answers
0
votes
1
answer
283
views
1
answer
1
vote
1
answer
344
views
1
answer
two-color microarray - Gene Set Enrichment Analysis
gsea twocolor microarray written 12 months ago by Sanches0 • updated 12 months ago by Gordon Smyth35k
2
votes
0
answers
676
views
0
answers
2
votes
1
answer
912
views
1
answer
Intepretation of Z scores for gene set enrichment analysis in MAST
gsea scrna mast written 13 months ago by siajunren0 • updated 13 months ago by Andrew_McDavid150
1
vote
1
answer
538
views
1
answer
FGSEA only runs with <1000 permutations
gsea fgsea written 14 months ago by shawn.w.foley0 • updated 14 months ago by assaron150
0
votes
0
answers
352
views
0
answers
GSEA threshold question
clusterprofiler R gsea reactomepa written 15 months ago by bhgyu30
0
votes
1
answer
477
views
1
answer
GAGE or GSEABase using expression data and pathway.gmt file for mouse
pathways gage R gsea written 16 months ago by snishtala030 • updated 16 months ago by Luo Weijun1.4k
1
vote
1
answer
356
views
1
answer
0
votes
1
answer
487
views
1
answer
topGO - treating up- and down-regulated genes separately
topgo pathway analysis gsea written 18 months ago by predeus0 • updated 18 months ago by LluĂ­s R370
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