0
votes
2
answers
44
views
2
answers
Issues in generating workable rank file for GSEA
gseabase deseq2 gsea pre-ranked gsea written 4 days ago by csijst0 • updated 4 days ago by Michael Love18k
0
votes
0
answers
74
views
0
answers
1
vote
1
answer
92
views
1
answer
Where is it possible to find gene sets in rdata format for GSEA ?
rattus norvegicus gsea written 8 weeks ago by Aurora10 • updated 8 weeks ago by Gordon Smyth33k
2
votes
1
answer
186
views
1
answer
Clusterprofiler - MSigDB gene set analysis - Updated
clusterprofiler gsea msigdb written 3 months ago by thomasjenner3330 • updated 3 months ago by Guangchuang Yu990
1
vote
2
answers
177
views
2
answers
GSVA for single sample
gsva gsea ssgsea written 4 months ago by jaison750
0
votes
1
answer
187
views
1
answer
merging gseaResult objects
clusterprofiler gsea written 4 months ago by robmarin0 • updated 4 months ago by Guangchuang Yu990
1
vote
0
answers
197
views
0
answers
0
votes
0
answers
159
views
0
answers
0
votes
0
answers
243
views
0
answers
2
votes
1
answer
497
views
1
answer
2
votes
1
answer
268
views
1
answer
GSEA using clusterprofileR
clusterprofiler gsea written 8 months ago by sup23010 • updated 8 months ago by assaron140
0
votes
0
answers
153
views
0
answers
0
votes
1
answer
244
views
1
answer
1
vote
1
answer
322
views
1
answer
two-color microarray - Gene Set Enrichment Analysis
gsea twocolor microarray written 9 months ago by Sanches0 • updated 9 months ago by Gordon Smyth33k
2
votes
0
answers
621
views
0
answers
0
votes
1
answer
789
views
1
answer
Intepretation of Z scores for gene set enrichment analysis in MAST
gsea scrna mast written 10 months ago by siajunren0 • updated 10 months ago by Andrew_McDavid130
1
vote
1
answer
486
views
1
answer
FGSEA only runs with <1000 permutations
gsea fgsea written 11 months ago by shawn.w.foley0 • updated 11 months ago by assaron140
0
votes
0
answers
303
views
0
answers
GSEA threshold question
clusterprofiler R gsea reactomepa written 12 months ago by bhgyu30
0
votes
1
answer
410
views
1
answer
GAGE or GSEABase using expression data and pathway.gmt file for mouse
pathways gage R gsea written 13 months ago by snishtala030 • updated 13 months ago by Luo Weijun1.4k
1
vote
1
answer
325
views
1
answer
0
votes
1
answer
415
views
1
answer
topGO - treating up- and down-regulated genes separately
topgo pathway analysis gsea written 15 months ago by predeus0 • updated 15 months ago by Lluís R330
0
votes
1
answer
483
views
1
answer
Statistic for GSA
gsea gsa concept written 16 months ago by Lluís R330 • updated 16 months ago by Pekka Kohonen190
2
votes
1
answer
383
views
1
answer
Direction aware fgsea test
gsea fgsea written 17 months ago by rubi90 • updated 17 months ago by assaron140
2
votes
1
answer
409
views
1
answer
0
votes
1
answer
469
views
1
answer
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