1
vote
0
answers
98
views
0
answers
0
votes
0
answers
65
views
0
answers
0
votes
0
answers
143
views
0
answers
2
votes
1
answer
280
views
1
answer
2
votes
1
answer
176
views
1
answer
GSEA using clusterprofileR
clusterprofiler gsea written 3 months ago by sup23010 • updated 3 months ago by assaron140
0
votes
0
answers
89
views
0
answers
0
votes
1
answer
180
views
1
answer
1
vote
1
answer
272
views
1
answer
two-color microarray - Gene Set Enrichment Analysis
gsea twocolor microarray written 4 months ago by Sanches0 • updated 4 months ago by Gordon Smyth32k
2
votes
0
answers
544
views
0
answers
0
votes
1
answer
626
views
1
answer
Intepretation of Z scores for gene set enrichment analysis in MAST
gsea scrna mast written 5 months ago by siajunren0 • updated 5 months ago by Andrew_McDavid90
1
vote
1
answer
380
views
1
answer
FGSEA only runs with <1000 permutations
gsea fgsea written 5 months ago by shawn.w.foley0 • updated 5 months ago by assaron140
0
votes
0
answers
237
views
0
answers
0
votes
1
answer
271
views
1
answer
GAGE or GSEABase using expression data and pathway.gmt file for mouse
pathways gage R gsea written 8 months ago by snishtala030 • updated 8 months ago by Luo Weijun1.4k
1
vote
1
answer
239
views
1
answer
0
votes
1
answer
292
views
1
answer
topGO - treating up- and down-regulated genes separately
topgo pathway analysis gsea written 10 months ago by predeus0 • updated 10 months ago by Lluís R310
1
vote
2
answers
638
views
2
answers
how to perform pre ranked GSEA in R?
microarray statistics R gsea written 2.9 years ago by Nemo60 • updated 10 months ago by predeus0
2
votes
1
answer
332
views
1
answer
0
votes
1
answer
351
views
1
answer
Statistic for GSA
gsea gsa concept written 11 months ago by Lluís R310 • updated 11 months ago by Pekka Kohonen190
2
votes
1
answer
284
views
1
answer
Direction aware fgsea test
gsea fgsea written 12 months ago by rubi80 • updated 12 months ago by assaron140
1
vote
4
answers
406
views
4
answers
GO slim data for GAGE GSEA analysis
go gage gsea written 17 months ago by rubi80 • updated 14 months ago by Guangchuang Yu860
0
votes
1
answer
358
views
1
answer
0
votes
1
answer
331
views
1
answer
ClusterProfiler can't load gmt file
clusterprofiler gsea gmt written 17 months ago by sarah.blackstone77340 • updated 17 months ago by Guangchuang Yu860
1
vote
1
answer
1.1k
views
1
answer
GSEA preranked analysis downstream of DEseq2
rnaseq deseq2 gsea written 17 months ago by EJ0 • updated 17 months ago by Michael Love15k
9
votes
3
answers
1.0k
views
3
answers
GSEA-like enrichment score calculation
gseabase gsea enrichment analysis written 19 months ago by Matthias Z.20 • updated 19 months ago by Gordon Smyth32k
0
votes
4
answers
422
views
4
answers
Gage and setp argument
gage gsea written 20 months ago by peter.chernek0
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