1
vote
0
answers
157
views
0
answers
2
votes
1
answer
117
views
1
answer
GSEA using clusterprofileR
clusterprofiler gsea written 4 weeks ago by sup23010 • updated 4 weeks ago by assaron130
0
votes
0
answers
59
views
0
answers
0
votes
1
answer
148
views
1
answer
1
vote
1
answer
236
views
1
answer
two-color microarray - Gene Set Enrichment Analysis
gsea twocolor microarray written 10 weeks ago by Sanches0 • updated 10 weeks ago by Gordon Smyth32k
2
votes
0
answers
510
views
0
answers
0
votes
1
answer
575
views
1
answer
Intepretation of Z scores for gene set enrichment analysis in MAST
gsea scrna mast written 3 months ago by siajunren0 • updated 3 months ago by Andrew_McDavid80
1
vote
1
answer
348
views
1
answer
FGSEA only runs with <1000 permutations
gsea fgsea written 3 months ago by shawn.w.foley0 • updated 3 months ago by assaron130
0
votes
0
answers
212
views
0
answers
0
votes
1
answer
237
views
1
answer
GAGE or GSEABase using expression data and pathway.gmt file for mouse
pathways gage R gsea written 6 months ago by snishtala030 • updated 6 months ago by Luo Weijun1.4k
1
vote
1
answer
212
views
1
answer
0
votes
1
answer
249
views
1
answer
topGO - treating up- and down-regulated genes separately
topgo pathway analysis gsea written 8 months ago by predeus0 • updated 8 months ago by Lluís R300
1
vote
2
answers
594
views
2
answers
how to perform pre ranked GSEA in R?
microarray statistics R gsea written 2.7 years ago by Nemo60 • updated 8 months ago by predeus0
2
votes
1
answer
304
views
1
answer
0
votes
1
answer
302
views
1
answer
Statistic for GSA
gsea gsa concept written 9 months ago by Lluís R300 • updated 9 months ago by Pekka Kohonen190
2
votes
1
answer
243
views
1
answer
Direction aware fgsea test
gsea fgsea written 10 months ago by rubi70 • updated 10 months ago by assaron130
1
vote
4
answers
361
views
4
answers
GO slim data for GAGE GSEA analysis
go gage gsea written 14 months ago by rubi70 • updated 12 months ago by Guangchuang Yu800
0
votes
1
answer
319
views
1
answer
0
votes
1
answer
299
views
1
answer
ClusterProfiler can't load gmt file
clusterprofiler gsea gmt written 15 months ago by sarah.blackstone77340 • updated 15 months ago by Guangchuang Yu800
1
vote
1
answer
934
views
1
answer
GSEA preranked analysis downstream of DEseq2
rnaseq deseq2 gsea written 15 months ago by EJ0 • updated 15 months ago by Michael Love14k
9
votes
3
answers
922
views
3
answers
GSEA-like enrichment score calculation
gseabase gsea enrichment analysis written 17 months ago by Matthias Z.20 • updated 17 months ago by Gordon Smyth32k
0
votes
4
answers
386
views
4
answers
Gage and setp argument
gage gsea written 18 months ago by peter.chernek0
1
vote
0
answers
333
views
0
answers
0
votes
3
answers
423
views
3
answers
gene set (enrichment) analysis
gsea gsa written 20 months ago by Bogdan470 • updated 20 months ago by Axel Klenk810
2
votes
2
answers
349
views
2
answers
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