8
votes
2
answers
2.4k
views
2
answers
Gene set enrichment analysis
topgo gseabase gostat gsea written 3.8 years ago by kaushal Raj Chaudhary10 • updated 3.8 years ago by Levi Waldron690
1
vote
2
answers
855
views
2
answers
how to perform pre ranked GSEA in R?
microarray statistics R gsea written 3.6 years ago by Nemo80 • updated 18 months ago by predeus0
0
votes
1
answer
964
views
1
answer
Gene set enrichment analysis with gage package returning NaN p-values
rnaseq gage gsea written 3.4 years ago by Tom0 • updated 3.4 years ago by Luo Weijun1.4k
5
votes
1
answer
967
views
1
answer
0
votes
0
answers
542
views
0
answers
1
vote
0
answers
621
views
0
answers
13
votes
2
answers
1.8k
views
2
answers
Best method/package for Gene Set Enrichment Analysis in microarrays?
gostats topgo goseq gsea gega written 2.9 years ago by jacorvar40 • updated 2.8 years ago by Robert Castelo2.2k
2
votes
2
answers
1.2k
views
6 follow
2
answers
Arguments for camera (gene set analysis)
camera gsea written 2.6 years ago by claire.n.levy10 • updated 2.6 years ago by Steve Lianoglou12k
1
vote
1
answer
407
views
1
answer
giving weight to DEG from limma output
limma gsea written 2.5 years ago by Shamim Sarhadi20 • updated 2.5 years ago by Aaron Lun21k
2
votes
2
answers
528
views
2
answers
0
votes
3
answers
629
views
3
answers
gene set (enrichment) analysis
gsea gsa written 2.5 years ago by Bogdan520 • updated 2.5 years ago by Axel Klenk920
1
vote
0
answers
494
views
0
answers
0
votes
4
answers
544
views
4
answers
Gage and setp argument
gage gsea written 2.4 years ago by peter.chernek0
9
votes
3
answers
1.7k
views
3
answers
GSEA-like enrichment score calculation
gseabase gsea enrichment analysis written 2.3 years ago by Matthias Z.20 • updated 2.3 years ago by Gordon Smyth35k
1
vote
1
answer
2.0k
views
1
answer
GSEA preranked analysis downstream of DEseq2
rnaseq deseq2 gsea written 2.1 years ago by EJ0 • updated 2.1 years ago by Michael Love19k
0
votes
1
answer
509
views
1
answer
ClusterProfiler can't load gmt file
clusterprofiler gsea gmt written 2.1 years ago by sarah.blackstone77340 • updated 2.1 years ago by Guangchuang Yu1.0k
1
vote
4
answers
539
views
4
answers
GO slim data for GAGE GSEA analysis
go gage gsea written 2.1 years ago by rubi90 • updated 22 months ago by Guangchuang Yu1.0k
0
votes
1
answer
519
views
1
answer
2
votes
1
answer
464
views
1
answer
2
votes
1
answer
424
views
1
answer
Direction aware fgsea test
gsea fgsea written 20 months ago by rubi90 • updated 20 months ago by assaron150
0
votes
1
answer
550
views
1
answer
Statistic for GSA
gsea gsa concept written 19 months ago by Lluís R370 • updated 19 months ago by Pekka Kohonen190
0
votes
1
answer
490
views
1
answer
topGO - treating up- and down-regulated genes separately
topgo pathway analysis gsea written 18 months ago by predeus0 • updated 18 months ago by Lluís R370
1
vote
1
answer
358
views
1
answer
0
votes
1
answer
479
views
1
answer
GAGE or GSEABase using expression data and pathway.gmt file for mouse
pathways gage R gsea written 16 months ago by snishtala030 • updated 16 months ago by Luo Weijun1.4k
0
votes
0
answers
357
views
0
answers
GSEA threshold question
clusterprofiler R gsea reactomepa written 15 months ago by bhgyu30
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