8
votes
2
answers
2.3k
views
2
answers
Gene set enrichment analysis
topgo gseabase gostat gsea written 3.6 years ago by kaushal Raj Chaudhary10 • updated 3.6 years ago by Levi Waldron490
1
vote
2
answers
781
views
2
answers
how to perform pre ranked GSEA in R?
microarray statistics R gsea written 3.3 years ago by Nemo70 • updated 15 months ago by predeus0
0
votes
1
answer
902
views
1
answer
Gene set enrichment analysis with gage package returning NaN p-values
rnaseq gage gsea written 3.2 years ago by Tom0 • updated 3.2 years ago by Luo Weijun1.4k
5
votes
1
answer
922
views
1
answer
0
votes
0
answers
509
views
0
answers
1
vote
0
answers
592
views
0
answers
13
votes
2
answers
1.7k
views
2
answers
Best method/package for Gene Set Enrichment Analysis in microarrays?
gostats topgo goseq gsea gega written 2.6 years ago by jacorvar40 • updated 2.6 years ago by Robert Castelo2.2k
2
votes
2
answers
954
views
6 follow
2
answers
Arguments for camera (gene set analysis)
camera gsea written 2.3 years ago by claire.n.levy10 • updated 2.3 years ago by Steve Lianoglou12k
1
vote
1
answer
384
views
1
answer
giving weight to DEG from limma output
limma gsea written 2.3 years ago by Shamim Sarhadi20 • updated 2.3 years ago by Aaron Lun19k
2
votes
2
answers
480
views
2
answers
0
votes
3
answers
583
views
3
answers
gene set (enrichment) analysis
gsea gsa written 2.3 years ago by Bogdan490 • updated 2.3 years ago by Axel Klenk830
1
vote
0
answers
452
views
0
answers
0
votes
4
answers
490
views
4
answers
Gage and setp argument
gage gsea written 2.1 years ago by peter.chernek0
9
votes
3
answers
1.4k
views
3
answers
GSEA-like enrichment score calculation
gseabase gsea enrichment analysis written 2.0 years ago by Matthias Z.20 • updated 2.0 years ago by Gordon Smyth33k
1
vote
1
answer
1.6k
views
1
answer
GSEA preranked analysis downstream of DEseq2
rnaseq deseq2 gsea written 22 months ago by EJ0 • updated 22 months ago by Michael Love18k
0
votes
1
answer
454
views
1
answer
ClusterProfiler can't load gmt file
clusterprofiler gsea gmt written 22 months ago by sarah.blackstone77340 • updated 22 months ago by Guangchuang Yu990
1
vote
4
answers
497
views
4
answers
GO slim data for GAGE GSEA analysis
go gage gsea written 22 months ago by rubi90 • updated 19 months ago by Guangchuang Yu990
0
votes
1
answer
469
views
1
answer
2
votes
1
answer
409
views
1
answer
2
votes
1
answer
383
views
1
answer
Direction aware fgsea test
gsea fgsea written 17 months ago by rubi90 • updated 17 months ago by assaron140
0
votes
1
answer
483
views
1
answer
Statistic for GSA
gsea gsa concept written 16 months ago by Lluís R330 • updated 16 months ago by Pekka Kohonen190
0
votes
1
answer
414
views
1
answer
topGO - treating up- and down-regulated genes separately
topgo pathway analysis gsea written 15 months ago by predeus0 • updated 15 months ago by Lluís R330
1
vote
1
answer
325
views
1
answer
0
votes
1
answer
410
views
1
answer
GAGE or GSEABase using expression data and pathway.gmt file for mouse
pathways gage R gsea written 13 months ago by snishtala030 • updated 13 months ago by Luo Weijun1.4k
0
votes
0
answers
303
views
0
answers
GSEA threshold question
clusterprofiler R gsea reactomepa written 12 months ago by bhgyu30
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