8
votes
2
answers
1.9k
views
2
answers
Gene set enrichment analysis
topgo gseabase gostat gsea written 3.0 years ago by kaushal Raj Chaudhary10 • updated 3.0 years ago by Levi Waldron380
13
votes
2
answers
1.3k
views
2
answers
Best method/package for Gene Set Enrichment Analysis in microarrays?
gostats topgo goseq gsea gega written 2.0 years ago by jacorvar30 • updated 2.0 years ago by Robert Castelo2.0k
1
vote
1
answer
949
views
1
answer
GSEA preranked analysis downstream of DEseq2
rnaseq deseq2 gsea written 15 months ago by EJ0 • updated 15 months ago by Michael Love15k
9
votes
3
answers
934
views
3
answers
GSEA-like enrichment score calculation
gseabase gsea enrichment analysis written 17 months ago by Matthias Z.20 • updated 17 months ago by Gordon Smyth32k
5
votes
1
answer
810
views
1
answer
0
votes
1
answer
765
views
1
answer
Gene set enrichment analysis with gage package returning NaN p-values
rnaseq gage gsea written 2.6 years ago by Tom0 • updated 2.6 years ago by Luo Weijun1.4k
2
votes
2
answers
680
views
6 follow
2
answers
Arguments for camera (gene set analysis)
camera gsea written 21 months ago by claire.n.levy10 • updated 21 months ago by Steve Lianoglou12k
1
vote
2
answers
601
views
2
answers
how to perform pre ranked GSEA in R?
microarray statistics R gsea written 2.7 years ago by Nemo60 • updated 8 months ago by predeus0
0
votes
1
answer
579
views
1
answer
Intepretation of Z scores for gene set enrichment analysis in MAST
gsea scrna mast written 3 months ago by siajunren0 • updated 3 months ago by Andrew_McDavid80
2
votes
0
answers
515
views
0
answers
1
vote
0
answers
487
views
0
answers
0
votes
3
answers
428
views
3
answers
gene set (enrichment) analysis
gsea gsa written 20 months ago by Bogdan470 • updated 20 months ago by Axel Klenk820
0
votes
0
answers
396
views
0
answers
0
votes
4
answers
393
views
4
answers
Gage and setp argument
gage gsea written 18 months ago by peter.chernek0
1
vote
4
answers
368
views
4
answers
GO slim data for GAGE GSEA analysis
go gage gsea written 15 months ago by rubi70 • updated 12 months ago by Guangchuang Yu800
2
votes
2
answers
355
views
2
answers
1
vote
1
answer
351
views
1
answer
FGSEA only runs with <1000 permutations
gsea fgsea written 4 months ago by shawn.w.foley0 • updated 4 months ago by assaron130
1
vote
0
answers
337
views
0
answers
1
vote
1
answer
336
views
1
answer
giving weight to DEG from limma output
limma gsea written 20 months ago by Shamim Sarhadi20 • updated 20 months ago by Aaron Lun17k
0
votes
1
answer
324
views
1
answer
2
votes
1
answer
308
views
1
answer
0
votes
1
answer
304
views
1
answer
Statistic for GSA
gsea gsa concept written 9 months ago by Lluís R300 • updated 9 months ago by Pekka Kohonen190
0
votes
1
answer
302
views
1
answer
ClusterProfiler can't load gmt file
clusterprofiler gsea gmt written 15 months ago by sarah.blackstone77340 • updated 15 months ago by Guangchuang Yu800
0
votes
1
answer
252
views
1
answer
topGO - treating up- and down-regulated genes separately
topgo pathway analysis gsea written 8 months ago by predeus0 • updated 8 months ago by Lluís R300
2
votes
1
answer
249
views
1
answer
Direction aware fgsea test
gsea fgsea written 10 months ago by rubi70 • updated 10 months ago by assaron130
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