8
votes
2
answers
2.0k
views
2
answers
Gene set enrichment analysis
topgo gseabase gostat gsea written 3.2 years ago by kaushal Raj Chaudhary10 • updated 3.2 years ago by Levi Waldron390
13
votes
2
answers
1.5k
views
2
answers
Best method/package for Gene Set Enrichment Analysis in microarrays?
gostats topgo goseq gsea gega written 2.3 years ago by jacorvar40 • updated 2.3 years ago by Robert Castelo2.1k
1
vote
1
answer
1.2k
views
1
answer
GSEA preranked analysis downstream of DEseq2
rnaseq deseq2 gsea written 18 months ago by EJ0 • updated 18 months ago by Michael Love16k
9
votes
3
answers
1.1k
views
3
answers
GSEA-like enrichment score calculation
gseabase gsea enrichment analysis written 20 months ago by Matthias Z.20 • updated 20 months ago by Gordon Smyth32k
5
votes
1
answer
859
views
1
answer
0
votes
1
answer
815
views
1
answer
Gene set enrichment analysis with gage package returning NaN p-values
rnaseq gage gsea written 2.8 years ago by Tom0 • updated 2.8 years ago by Luo Weijun1.4k
2
votes
2
answers
766
views
6 follow
2
answers
Arguments for camera (gene set analysis)
camera gsea written 24 months ago by claire.n.levy10 • updated 24 months ago by Steve Lianoglou12k
0
votes
1
answer
657
views
1
answer
Intepretation of Z scores for gene set enrichment analysis in MAST
gsea scrna mast written 6 months ago by siajunren0 • updated 6 months ago by Andrew_McDavid100
1
vote
2
answers
655
views
2
answers
how to perform pre ranked GSEA in R?
microarray statistics R gsea written 3.0 years ago by Nemo60 • updated 11 months ago by predeus0
2
votes
0
answers
556
views
0
answers
1
vote
0
answers
530
views
0
answers
0
votes
3
answers
488
views
3
answers
gene set (enrichment) analysis
gsea gsa written 23 months ago by Bogdan480 • updated 23 months ago by Axel Klenk830
0
votes
0
answers
442
views
0
answers
0
votes
4
answers
435
views
4
answers
Gage and setp argument
gage gsea written 21 months ago by peter.chernek0
1
vote
4
answers
424
views
4
answers
GO slim data for GAGE GSEA analysis
go gage gsea written 18 months ago by rubi80 • updated 15 months ago by Guangchuang Yu890
1
vote
1
answer
401
views
1
answer
FGSEA only runs with <1000 permutations
gsea fgsea written 7 months ago by shawn.w.foley0 • updated 7 months ago by assaron140
2
votes
2
answers
395
views
2
answers
0
votes
1
answer
383
views
1
answer
Statistic for GSA
gsea gsa concept written 12 months ago by Lluís R310 • updated 12 months ago by Pekka Kohonen190
0
votes
1
answer
379
views
1
answer
1
vote
0
answers
378
views
0
answers
2
votes
1
answer
351
views
1
answer
1
vote
1
answer
350
views
1
answer
giving weight to DEG from limma output
limma gsea written 23 months ago by Shamim Sarhadi20 • updated 23 months ago by Aaron Lun18k
0
votes
1
answer
349
views
1
answer
ClusterProfiler can't load gmt file
clusterprofiler gsea gmt written 18 months ago by sarah.blackstone77340 • updated 18 months ago by Guangchuang Yu890
0
votes
1
answer
318
views
1
answer
topGO - treating up- and down-regulated genes separately
topgo pathway analysis gsea written 11 months ago by predeus0 • updated 11 months ago by Lluís R310
2
votes
1
answer
313
views
1
answer
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