1
vote
2
answers
655
views
2
answers
how to perform pre ranked GSEA in R?
microarray statistics R gsea written 3.0 years ago by Nemo60 • updated 11 months ago by predeus0
1
vote
0
answers
529
views
0
answers
13
votes
2
answers
1.5k
views
2
answers
Best method/package for Gene Set Enrichment Analysis in microarrays?
gostats topgo goseq gsea gega written 2.3 years ago by jacorvar40 • updated 2.2 years ago by Robert Castelo2.1k
2
votes
2
answers
766
views
6 follow
2
answers
Arguments for camera (gene set analysis)
camera gsea written 23 months ago by claire.n.levy10 • updated 23 months ago by Steve Lianoglou12k
1
vote
0
answers
374
views
0
answers
9
votes
3
answers
1.1k
views
3
answers
GSEA-like enrichment score calculation
gseabase gsea enrichment analysis written 20 months ago by Matthias Z.20 • updated 20 months ago by Gordon Smyth32k
8
votes
2
answers
2.0k
views
2
answers
Gene set enrichment analysis
topgo gseabase gostat gsea written 3.2 years ago by kaushal Raj Chaudhary10 • updated 3.2 years ago by Levi Waldron390
0
votes
1
answer
812
views
1
answer
Gene set enrichment analysis with gage package returning NaN p-values
rnaseq gage gsea written 2.8 years ago by Tom0 • updated 2.8 years ago by Luo Weijun1.4k
5
votes
1
answer
857
views
1
answer
0
votes
0
answers
439
views
0
answers
1
vote
1
answer
350
views
1
answer
giving weight to DEG from limma output
limma gsea written 23 months ago by Shamim Sarhadi20 • updated 23 months ago by Aaron Lun18k
2
votes
2
answers
392
views
2
answers
0
votes
3
answers
484
views
3
answers
gene set (enrichment) analysis
gsea gsa written 23 months ago by Bogdan480 • updated 23 months ago by Axel Klenk830
0
votes
4
answers
434
views
4
answers
Gage and setp argument
gage gsea written 21 months ago by peter.chernek0
1
vote
1
answer
1.2k
views
1
answer
GSEA preranked analysis downstream of DEseq2
rnaseq deseq2 gsea written 18 months ago by EJ0 • updated 18 months ago by Michael Love16k
0
votes
1
answer
347
views
1
answer
ClusterProfiler can't load gmt file
clusterprofiler gsea gmt written 18 months ago by sarah.blackstone77340 • updated 18 months ago by Guangchuang Yu890
1
vote
4
answers
421
views
4
answers
GO slim data for GAGE GSEA analysis
go gage gsea written 18 months ago by rubi80 • updated 15 months ago by Guangchuang Yu890
0
votes
1
answer
376
views
1
answer
2
votes
1
answer
348
views
1
answer
2
votes
1
answer
307
views
1
answer
Direction aware fgsea test
gsea fgsea written 13 months ago by rubi80 • updated 13 months ago by assaron140
0
votes
1
answer
380
views
1
answer
Statistic for GSA
gsea gsa concept written 12 months ago by Lluís R310 • updated 12 months ago by Pekka Kohonen190
0
votes
1
answer
313
views
1
answer
topGO - treating up- and down-regulated genes separately
topgo pathway analysis gsea written 11 months ago by predeus0 • updated 11 months ago by Lluís R310
1
vote
1
answer
250
views
1
answer
0
votes
1
answer
298
views
1
answer
GAGE or GSEABase using expression data and pathway.gmt file for mouse
pathways gage R gsea written 9 months ago by snishtala030 • updated 9 months ago by Luo Weijun1.4k
0
votes
0
answers
250
views
0
answers
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