Showing: gseareset
2
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1
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3.7k
views
1
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GSEA preranked analysis downstream of DEseq2
rnaseq deseq2 gsea written 3.3 years ago by EJ0 • updated 3.3 years ago by Michael Love26k
8
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2
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3.3k
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2
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Gene set enrichment analysis
topgo gseabase gostat gsea written 5.0 years ago by kaushal Raj Chaudhary10 • updated 5.0 years ago by Levi Waldron980
9
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3
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2.7k
views
3
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GSEA-like enrichment score calculation
gseabase gsea enrichment analysis written 3.5 years ago by Matthias Z.20 • updated 3.5 years ago by Gordon Smyth39k
13
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2
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2.4k
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2
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Best method/package for Gene Set Enrichment Analysis in microarrays?
gostats topgo goseq gsea gega written 4.1 years ago by jacorvar40 • updated 4.1 years ago by Robert Castelo2.3k
2
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1
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2.2k
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1
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2
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2
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1.8k
views
6 follow
2
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Arguments for camera (gene set analysis)
camera gsea written 3.8 years ago by claire.n.levy10 • updated 3.8 years ago by Steve Lianoglou12k
2
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1
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1.5k
views
1
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Intepretation of Z scores for gene set enrichment analysis in MAST
gsea scrna mast written 2.4 years ago by siajunren0 • updated 2.4 years ago by Andrew_McDavid190
0
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1
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1.3k
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1
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Gene set enrichment analysis with gage package returning NaN p-values
rnaseq gage gsea written 4.6 years ago by Tom0 • updated 4.6 years ago by Luo Weijun1.5k
5
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1
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1.2k
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1
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1
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2
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1.1k
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2
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how to perform pre ranked GSEA in R?
microarray statistics R gsea written 4.8 years ago by Nemo80 • updated 2.7 years ago by predeus0
2
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0
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1.0k
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0
answers
3
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1
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909
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1
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DESeq2 log2FC shrink before GSEA or not?
rnaseq deseq2 gsea gene espression written 9 months ago by bmreilly0 • updated 9 months ago by Michael Love26k
0
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1
answer
860
views
1
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topGO - treating up- and down-regulated genes separately
topgo pathway analysis gsea written 2.7 years ago by predeus0 • updated 2.7 years ago by Lluís Revilla Sancho530
0
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3
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847
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3
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gene set (enrichment) analysis
gsea gsa written 3.7 years ago by Bogdan580 • updated 3.7 years ago by Axel Klenk940
0
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1
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846
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1
answer
Statistic for GSA
gsea gsa concept written 2.8 years ago by Lluís Revilla Sancho530 • updated 2.8 years ago by Pekka Kohonen190
1
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1
answer
799
views
1
answer
FGSEA only runs with <1000 permutations
gsea fgsea written 2.4 years ago by shawn.w.foley0 • updated 2.4 years ago by assaron150
2
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1
answer
799
views
1
answer
Clusterprofiler - MSigDB gene set analysis - Updated
clusterprofiler gsea msigdb written 21 months ago by thomasjenner3330 • updated 20 months ago by Guangchuang Yu1.1k
0
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1
answer
797
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1
answer
GAGE or GSEABase using expression data and pathway.gmt file for mouse
pathways gage R gsea written 2.6 years ago by snishtala030 • updated 2.6 years ago by Luo Weijun1.5k
1
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4
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795
views
4
answers
GO slim data for GAGE GSEA analysis
go gage gsea written 3.3 years ago by rubi90 • updated 3.1 years ago by Guangchuang Yu1.1k
1
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0
answers
792
views
0
answers
0
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1
answer
780
views
1
answer
ClusterProfiler can't load gmt file
clusterprofiler gsea gmt written 3.3 years ago by sarah.blackstone77340 • updated 3.3 years ago by Guangchuang Yu1.1k
0
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4
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753
views
4
answers
Gage and setp argument
gage gsea written 3.6 years ago by peter.chernek0
0
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1
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744
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1
answer
2
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1
answer
699
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1
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2
votes
2
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696
views
2
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