Bioconductor

No posts found.

0 results • Page 1 of 1

Recent ...

Replies

Comment: Small RNA-seq Analysis DESEQ2 : Unexpected Significance by ATpoint ★ 3.6k

"Raw" counts, so you're plotting un-normalized data, hence plots have no meaning in terms of groupwise comparisons. Use the `normTransform`…

Answer: In DiffBind, dba.blacklist changes the minOverlap parameter by Sam ▴ 10

I have found a workaround : running dba.blacklist **after** running dba.count (while running dba.count with minOverlap=1). ``` dbObj_co…

Comment: Small RNA-seq Analysis DESEQ2 : Unexpected Significance by samer • 0

By applying the log2 transformation to the raw counts of small RNAS AND after adding 1 to each count, the resulting values often approximat…

Comment: Small RNA-seq Analysis DESEQ2 : Unexpected Significance by samer • 0

and sometimes in other count plots we observe a difference between the counts of the 2 conditions (ON/OFF) where it should be significant b…

Comment: Small RNA-seq Analysis DESEQ2 : Unexpected Significance by ATpoint ★ 3.6k

What is `Log2 Counts + 1`? Please show code for the plots. And please remove the comments and move everything to the toplevel question usin…

Votes

Answer: WGCNA documentation not available

Awards • All

Popular Question to Assa Yeroslaviz ★ 1.5k

Scholar to Gordon Smyth 49k

Popular Question to Lluís Revilla Sancho ▴ 720

Popular Question to Frederik Ziebell ▴ 20