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Answer: Library sizes of miRNA sequencing data and TMM normalization with Edge-R
by
Gordon Smyth
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Choosing which samples to normalize together is not dependent on library size but rather on (1) whether the tissue samples are comparable a…
Comment: Atena package - error (new user)
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lalanis1
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0
Thanks a lot, Calvo.
Will run my files with revised version soon!
Best regards,
Lalani
Comment: Nested paired design with covariates in limma
by
Gordon Smyth
47k
Please post a new question with enough detail to answer your question. If you want bespoke advance, then you need to post the details of yo…
Comment: Question about GWASTools gdsSubset
by
Stephanie M. Gogarten
▴
840
You could see if an attribute has been set on the genotype node indicating the order:
```
> library(gdsfmt)
> gdsfile <- system.file("extda…
Comment: Nested paired design with covariates in limma
by
Nathan
•
0
Hello Ibrahim, Gordon (this is an extension of the question)
I have a data set that is similarly nested in subject (like "Subject_ID" abov…
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