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Comment: Diffbind "No genome detected"
by
kyliecode
•
0
Hi James,
Thanks for your reply!
For the blacklist, I just used the one provided by DiffBind, which is "DBA_BLACKLIST_MM10".
For the grey…
Answer: DESeq2 on multilevel design variable
by
ATpoint
★
2.9k
You can make your life simply and use a contrast for each, for example:
```r
library(DESeq2)
dds <- makeExampleDESeqDataSet()
diagnosis <…
Answer: Diffbind "No genome detected"
by
James W. MacDonald
63k
You can specify the greylist in the same manner as the blacklist, which should fix your problem.
Answer: Generate false reads for testing
by
James W. MacDonald
63k
https://www.bioconductor.org/packages/release/bioc/html/polyester.html
Comment: Adjusting for baseline when having longitudinal data, mixed model and no treat
by
Anna
▴
20
Yes. But still I prefer using the covariance matrix over fixed effects for power issues. Or at least I wanted to use it as such before our …
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Mike Smith
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