Showing: htseqcounts • reset
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Normalise counts when tumour samples have normal tissue contamination.
rnaseq edger deseq deseq2 htseqcounts written 20 months ago by Deepali • 0
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how to read htseq-count
edger htseqcounts written 21 months ago by Bioinformatics • 30 • updated 21 months ago by Gordon Smyth ♦ 38k
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Difference between SummarizeOverlaps and HTSeq
R summarizeoverlaps htseqcounts written 23 months ago by Walter F. Baumann • 10 • updated 23 months ago by thokall • 160
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Length of 'group' must equal number of columns in 'counts'
edger htseqcounts written 2.1 years ago by mictadlo • 0 • updated 2.1 years ago by Gordon Smyth ♦ 38k
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read counts for each gene for edgeR
edger htseqcounts written 2.1 years ago by mictadlo • 0 • updated 2.1 years ago by Gordon Smyth ♦ 38k
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Why does total unique map not equal to library size?
rnaseq star htseqcounts written 2.1 years ago by Ahdee • 40
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FeatureCounts output to SAM like htseq-counts?
featurecounts sam htseqcounts written 2.4 years ago by courtney.stairs • 0
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Error in DESeqDataSetFromHTSeqCount: Gene IDs (first column) differ between files.
chipseq deseq2 htseqcounts written 2.6 years ago by JunLVI • 40
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RNA-seq: EdgeR's togtags table not correlating to htseq-count's CPM values
rnaseq edger htseqcounts written 2.8 years ago by romsdahl • 0 • updated 2.8 years ago by Aaron Lun • 25k
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DEXSeq error: erro in dexseq_count.py
dexseq dexseq_count htseqcounts written 3.1 years ago by as1023 • 0
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PCA results different from th same sample but different counting method
deseq2 pca htseqcounts tximportdata written 3.3 years ago by jarod_v6@libero.it • 40 • updated 3.3 years ago by Michael Love ♦ 25k
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GOSeq: analysis of unsupported genome after HTseq and DEseq2 - building gene lengths, comparing contrasts and understanding results.
rnaseq goseq deseq2 htseqcounts plant written 3.4 years ago by Ben Mansfeld • 0 • updated 3.4 years ago by Gordon Smyth ♦ 38k
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Error: could not find function "HTSeqCounts"
dexseq htseq htseqcounts could not find function written 3.5 years ago by sakura.nussbaum • 10 • updated 3.5 years ago by Martin Morgan ♦♦ 23k
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