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Comment: mas5calls function doesn't work; mirna40cdf problem by James W. MacDonald 62k
The `paCalls` function in `oligo` is meant to do the MAS5.0 calls that you could have previously done using `mas5calls` with the `affy` pac…
Answer: EdgeR model matrix by James W. MacDonald 62k
It's not missing. You are using a treatments contrast, where one level is defined as the baseline (the intercept), and all other levels are…
Answer: Create an Annotation DB file for a non-model organism by James W. MacDonald 62k
You can make an `OrgDb` package using `makeOrgPackage` from the `AnnotationForge` package.
Comment: Error in `$<-.data.frame`(`*tmp*`, "dispersion", value = NA) by Ben J • 0
Many thanks for the advice - I will try this and get back to you if I have further issues. BW Ben
Comment: nullranges by Michael Love 39k
Let's discuss a few of the points of bootRanges: * `blockLength` - you want this to be larger than the typical clustering pattern but smal…
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Comment: Is ther an annotation package for sheep (Ovis aries)
Comment: mas5calls function doesn't work; mirna40cdf problem
A: Creating Annotation package for GPL10427
Creating Annotation package for GPL10427
Answer: log2 of normalized counts for further analyzes
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