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Job: Open full-time academic position - Bioinformatics, Department of Computer Science, ULB, Brussels, Belgium
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Job: Bioinformatics Support Specialist @ University at Albany, Albany, NY
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Job: Postdoctoral Fellow position in Computational/Statistical Epigenomics @ Moffitt Cancer Center, Tampa, FL
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3.8 years ago tengmx • 0
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Job: Summer Vacation Studentships in Data Science, MRC Cancer Unit, University of Cambridge, UK
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2.3 years ago Sebastian Lewandowski • 0
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4.5 years ago Fred Hutch (Recruiting) ▴ 40
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7.7 years ago • updated 7.6 years ago Luo Weijun ★ 1.6k
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14 months ago marisona.almazan • 0
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7.9 years ago Thomas.F.Hahn2 • 0
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3.3 years ago Laura • 0
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Job: Two year postdoc position at Trento, Laboratory of Neurogenomic Biomarkers, Italy
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7.9 years ago enridomenici ▴ 10
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Job: Bioinformatics Analyst II, Genomics Shared Resource (Fred Hutchinson Cancer Research Center Seattle, WA)
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4.9 years ago Fred Hutch (Recruiting) ▴ 40
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7.2 years ago • updated 7.0 years ago Luo Weijun ★ 1.6k
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Job: Harvard Medical School – Postdoctoral Research Associate Position at the Center for Biomedical Informatics
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9.4 years ago • updated 9.3 years ago Doe, Aimee ▴ 40
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9.0 years ago Bernd Fischer ▴ 550
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Job: PhD Position in Bioinformatics
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7.4 years ago stephan.pabinger • 0
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Job: Post-doc in Prostate Cancer Research (Statistics / Computational Biology) at University of St Andrews (+PhD position also available)
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5.8 years ago Andy Lynch ▴ 120
518 results • Page 2 of 11
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Replies
Comment: How to retrieve gene ontology GO class from gene list? by bandconductor • 0
Thanks, this is potentially a much faster way than parsing BiomRt. However, it is only returning one GO term right now (biomaRt returns a f…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by James W. MacDonald 65k
Both `RUVseq` and `sva` are meant to be used to remove technical variability. The problem is the identification of variability that is tech…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by Alexandre • 0
Hello James, Thank you very much for your answer and taking the time to read my post. I understand your remark, but isn't the approach o…
Comment: PCA plot suggestions by JKim • 0
cross post: https://www.biostars.org/p/9593486/
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by James W. MacDonald 65k
You cannot correct for technical variability due to batch if samples are nested in batch. The technical and biological differences are comp…
Votes
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
C: null model and DEXSeqDataSet object in DEXSEQ
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
A: How to explain how DESeq2 works to someone with zero bioinformatics background?
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