1
vote
2
answers
777
views
2
answers
GeneAnswer for bacteria metagenomes
geneanswers kegg metagenome written 3.8 years ago by francesca.defilippis40 • updated 2.2 years ago by Guangchuang Yu1.0k
4
votes
5
answers
1.1k
views
5
answers
0
votes
1
answer
587
views
1
answer
How to use topGO and KEGG with de-novo species
limma topgo edger kegg kegga written 12 months ago by mictadlo0 • updated 12 months ago by Gordon Smyth35k
7
votes
1
answer
291
views
1
answer
Analysis of pathways using edgeR
rnaseq edger kegg differential expression written 6 months ago by fawazfebin30 • updated 6 months ago by Gordon Smyth35k
4
votes
1
answer
1.3k
views
1
answer
0
votes
0
answers
296
views
0
answers
Retrieve KEGG from protein GI
keggrest R kegg written 21 months ago by felipelira30
2
votes
4
answers
618
views
4
answers
0
votes
1
answer
399
views
1
answer
Accessing KEGG (errors w/ KEGGREST)
keggrest kegg written 20 months ago by sampsonj740 • updated 20 months ago by Gordon Smyth35k
1
vote
2
answers
644
views
2
answers
Pathview pathview kegg.native=TRUE throws error in img
rnaseq pathview error bioconductor kegg written 19 months ago by guillermo.marco30 • updated 10 months ago by map208510
2
votes
2
answers
244
views
2
answers
Can't find gene list for KEGG genesets
kegg geneset gage package genelist written 13 months ago by sup23010 • updated 13 months ago by Gordon Smyth35k
0
votes
1
answer
222
views
1
answer
KEGG with pathview using CuffDiff data
kegg cuffdiff readcufflinks cuff written 10 months ago by pierre.biojoux0 • updated 10 months ago by thokall120
1
vote
0
answers
213
views
0
answers
0
votes
1
answer
204
views
1
answer
kegga error from edgeR
edger R bioconductor kegg pathway analysis written 7 months ago by Biologist70 • updated 7 months ago by Gordon Smyth35k
1
vote
1
answer
130
views
1
answer
Gene Set Enrichment based on gene presence/absence
kegg gene set enrichment written 7 months ago by RMRG10 • updated 7 months ago by LluĂ­s R370
1
vote
2
answers
201
views
2
answers
Gene-Metabolite and Metabolite-Pathway network from KEGG with KEGGREST
keggrest kegg written 5 months ago by hkarakurt10 • updated 5 months ago by 7kemZmani10
4
votes
3
answers
5.6k
views
3
answers
Packages for GO and KEGG analysis on RNAseq data
go goseq gage kegg written 4.0 years ago by Merienne Nicolas120 • updated 3.9 years ago by Gordon Smyth35k
0
votes
1
answer
851
views
1
answer
Incomplete gene IDs in KEGG pathway testing
gostats kegg written 3.9 years ago by willmacnair0 • updated 3.8 years ago by James W. MacDonald47k
0
votes
2
answers
4.0k
views
2
answers
0
votes
8
answers
2.9k
views
8
answers
gage pathways enrichment analysis
pathways gage kegg written 3.8 years ago by francesca.defilippis40 • updated 3.8 years ago by Luo Weijun1.4k
0
votes
2
answers
770
views
2
answers
retrieve kegg pathway abundances from gage analysis
pathways gage kegg written 3.6 years ago by francesca.defilippis40 • updated 3.6 years ago by Luo Weijun1.4k
0
votes
1
answer
1.6k
views
1
answer
1
vote
0
answers
535
views
0
answers
0
votes
3
answers
798
views
3
answers
Gene Symbol with Pathview
visualization pathview bioconductor kegg written 2.9 years ago by abhinavbn0 • updated 2.9 years ago by Luo Weijun1.4k
2
votes
1
answer
387
views
1
answer
elim method for KEGG pathways?
genesetenrichment kegg elim written 2.8 years ago by jacorvar40 • updated 2.8 years ago by James W. MacDonald47k
0
votes
3
answers
751
views
3
answers
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