1
vote
2
answers
722
views
2
answers
GeneAnswer for bacteria metagenomes
geneanswers kegg metagenome written 3.6 years ago by francesca.defilippis40 • updated 23 months ago by Guangchuang Yu990
4
votes
5
answers
1.0k
views
5
answers
0
votes
1
answer
469
views
1
answer
How to use topGO and KEGG with de-novo species
limma topgo edger kegg kegga written 9 months ago by mictadlo0 • updated 9 months ago by Gordon Smyth33k
7
votes
1
answer
228
views
1
answer
Analysis of pathways using edgeR
rnaseq edger kegg differential expression written 3 months ago by fawazfebin30 • updated 3 months ago by Gordon Smyth33k
4
votes
1
answer
1.2k
views
1
answer
0
votes
0
answers
272
views
0
answers
Retrieve KEGG from protein GI
keggrest R kegg written 18 months ago by felipelira30
2
votes
4
answers
541
views
4
answers
0
votes
1
answer
355
views
1
answer
Accessing KEGG (errors w/ KEGGREST)
keggrest kegg written 17 months ago by sampsonj740 • updated 17 months ago by Gordon Smyth33k
1
vote
2
answers
554
views
2
answers
Pathview pathview kegg.native=TRUE throws error in img
rnaseq pathview error bioconductor kegg written 15 months ago by guillermo.marco30 • updated 7 months ago by map208510
2
votes
2
answers
206
views
2
answers
Can't find gene list for KEGG genesets
kegg geneset gage package genelist written 10 months ago by sup23010 • updated 10 months ago by Gordon Smyth33k
0
votes
1
answer
185
views
1
answer
KEGG with pathview using CuffDiff data
kegg cuffdiff readcufflinks cuff written 7 months ago by pierre.biojoux0 • updated 7 months ago by thokall110
1
vote
0
answers
175
views
0
answers
0
votes
1
answer
141
views
1
answer
kegga error from edgeR
edger R bioconductor kegg pathway analysis written 3 months ago by Biologist70 • updated 3 months ago by Gordon Smyth33k
1
vote
1
answer
103
views
1
answer
Gene Set Enrichment based on gene presence/absence
kegg gene set enrichment written 3 months ago by RMRG10 • updated 3 months ago by LluĂ­s R330
1
vote
2
answers
163
views
2
answers
Gene-Metabolite and Metabolite-Pathway network from KEGG with KEGGREST
keggrest kegg written 9 weeks ago by hkarakurt10 • updated 8 weeks ago by 7kemZmani10
4
votes
3
answers
5.3k
views
3
answers
Packages for GO and KEGG analysis on RNAseq data
go goseq gage kegg written 3.8 years ago by Merienne Nicolas120 • updated 3.7 years ago by Gordon Smyth33k
0
votes
1
answer
818
views
1
answer
Incomplete gene IDs in KEGG pathway testing
gostats kegg written 3.6 years ago by willmacnair0 • updated 3.6 years ago by James W. MacDonald46k
0
votes
2
answers
3.8k
views
2
answers
0
votes
8
answers
2.7k
views
8
answers
gage pathways enrichment analysis
pathways gage kegg written 3.6 years ago by francesca.defilippis40 • updated 3.5 years ago by Luo Weijun1.4k
0
votes
2
answers
719
views
2
answers
retrieve kegg pathway abundances from gage analysis
pathways gage kegg written 3.3 years ago by francesca.defilippis40 • updated 3.3 years ago by Luo Weijun1.4k
0
votes
1
answer
1.5k
views
1
answer
1
vote
0
answers
487
views
0
answers
0
votes
3
answers
725
views
3
answers
Gene Symbol with Pathview
visualization pathview bioconductor kegg written 2.7 years ago by abhinavbn0 • updated 2.7 years ago by Luo Weijun1.4k
2
votes
1
answer
364
views
1
answer
elim method for KEGG pathways?
genesetenrichment kegg elim written 2.6 years ago by jacorvar40 • updated 2.6 years ago by James W. MacDonald46k
0
votes
3
answers
696
views
3
answers
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