5
votes
1
answer
1.5k
views
1
answer
1
vote
2
answers
820
views
2
answers
GeneAnswer for bacteria metagenomes
geneanswers kegg metagenome written 4.1 years ago by francesca.defilippis60 • updated 2.4 years ago by Guangchuang Yu1.1k
4
votes
5
answers
1.2k
views
5
answers
0
votes
1
answer
705
views
1
answer
How to use topGO and KEGG with de-novo species
limma topgo edger kegg kegga written 15 months ago by mictadlo0 • updated 15 months ago by Gordon Smyth35k
7
votes
1
answer
386
views
1
answer
Analysis of pathways using edgeR
rnaseq edger kegg differential expression written 9 months ago by fawazfebin30 • updated 9 months ago by Gordon Smyth35k
0
votes
0
answers
321
views
0
answers
Retrieve KEGG from protein GI
keggrest R kegg written 24 months ago by felipelira30
2
votes
4
answers
695
views
4
answers
0
votes
1
answer
436
views
1
answer
Accessing KEGG (errors w/ KEGGREST)
keggrest kegg written 23 months ago by sampsonj740 • updated 23 months ago by Gordon Smyth35k
1
vote
2
answers
738
views
2
answers
Pathview pathview kegg.native=TRUE throws error in img
rnaseq pathview error bioconductor kegg written 21 months ago by guillermo.marco30 • updated 13 months ago by map208510
2
votes
2
answers
303
views
2
answers
Can't find gene list for KEGG genesets
kegg geneset gage package genelist written 16 months ago by sup23010 • updated 16 months ago by Gordon Smyth35k
0
votes
1
answer
277
views
1
answer
KEGG with pathview using CuffDiff data
kegg cuffdiff readcufflinks cuff written 13 months ago by pierre.biojoux0 • updated 12 months ago by thokall120
1
vote
0
answers
250
views
0
answers
0
votes
1
answer
274
views
1
answer
kegga error from edgeR
edger R bioconductor kegg pathway analysis written 9 months ago by Biologist70 • updated 9 months ago by Gordon Smyth35k
1
vote
1
answer
168
views
1
answer
Gene Set Enrichment based on gene presence/absence
kegg gene set enrichment written 9 months ago by RMRG10 • updated 9 months ago by LluĂ­s Revilla Sancho430
1
vote
2
answers
280
views
2
answers
Gene-Metabolite and Metabolite-Pathway network from KEGG with KEGGREST
keggrest kegg written 7 months ago by hkarakurt20 • updated 7 months ago by 7kemZmani10
1
vote
1
answer
75
views
1
answer
4
votes
3
answers
5.9k
views
3
answers
Packages for GO and KEGG analysis on RNAseq data
go goseq gage kegg written 4.2 years ago by Merienne Nicolas120 • updated 4.1 years ago by Gordon Smyth35k
0
votes
1
answer
891
views
1
answer
Incomplete gene IDs in KEGG pathway testing
gostats kegg written 4.1 years ago by willmacnair0 • updated 4.1 years ago by James W. MacDonald48k
0
votes
2
answers
4.2k
views
2
answers
0
votes
8
answers
3.1k
views
8
answers
gage pathways enrichment analysis
pathways gage kegg written 4.1 years ago by francesca.defilippis60 • updated 4.0 years ago by Luo Weijun1.4k
0
votes
2
answers
825
views
2
answers
retrieve kegg pathway abundances from gage analysis
pathways gage kegg written 3.8 years ago by francesca.defilippis60 • updated 3.8 years ago by Luo Weijun1.4k
0
votes
1
answer
1.7k
views
1
answer
1
vote
0
answers
562
views
0
answers
0
votes
3
answers
893
views
3
answers
Gene Symbol with Pathview
visualization pathview bioconductor kegg written 3.2 years ago by abhinavbn0 • updated 3.1 years ago by Luo Weijun1.4k
2
votes
1
answer
413
views
1
answer
elim method for KEGG pathways?
genesetenrichment kegg elim written 3.0 years ago by jacorvar40 • updated 3.0 years ago by James W. MacDonald48k
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