1
vote
2
answers
661
views
2
answers
GeneAnswer for bacteria metagenomes
geneanswers kegg metagenome written 3.3 years ago by francesca.defilippis40 • updated 19 months ago by Guangchuang Yu890
4
votes
5
answers
961
views
5
answers
0
votes
1
answer
345
views
1
answer
How to use topGO and KEGG with de-novo species
limma topgo edger kegg kegga written 5 months ago by mictadlo0 • updated 5 months ago by Gordon Smyth32k
4
votes
1
answer
1.1k
views
1
answer
0
votes
0
answers
247
views
0
answers
Retrieve KEGG from protein GI
keggrest R kegg written 14 months ago by felipelira30
2
votes
4
answers
420
views
4
answers
0
votes
1
answer
289
views
1
answer
Accessing KEGG (errors w/ KEGGREST)
keggrest kegg written 13 months ago by sampsonj740 • updated 13 months ago by Gordon Smyth32k
1
vote
2
answers
432
views
2
answers
Pathview pathview kegg.native=TRUE throws error in img
rnaseq pathview error bioconductor kegg written 12 months ago by guillermo.marco30 • updated 3 months ago by map208510
2
votes
2
answers
164
views
2
answers
Can't find gene list for KEGG genesets
kegg geneset gage package genelist written 6 months ago by sup23010 • updated 6 months ago by Gordon Smyth32k
0
votes
1
answer
133
views
1
answer
KEGG with pathview using CuffDiff data
kegg cuffdiff readcufflinks cuff written 3 months ago by pierre.biojoux0 • updated 3 months ago by thokall100
1
vote
0
answers
112
views
0
answers
0
votes
1
answer
67
views
1
answer
kegga error from edgeR
edger R bioconductor kegg pathway analysis written 2 days ago by ghk0 • updated 2 days ago by Gordon Smyth32k
1
vote
1
answer
38
views
1
answer
Gene Set Enrichment based on gene presence/absence
kegg gene set enrichment written 1 day ago by RMRG10 • updated 1 day ago by Lluís R310
4
votes
3
answers
4.9k
views
3
answers
Packages for GO and KEGG analysis on RNAseq data
go goseq gage kegg written 3.5 years ago by Merienne Nicolas120 • updated 3.3 years ago by Gordon Smyth32k
0
votes
1
answer
757
views
1
answer
Incomplete gene IDs in KEGG pathway testing
gostats kegg written 3.3 years ago by willmacnair0 • updated 3.3 years ago by James W. MacDonald45k
0
votes
2
answers
3.5k
views
2
answers
0
votes
8
answers
2.5k
views
8
answers
gage pathways enrichment analysis
pathways gage kegg written 3.3 years ago by francesca.defilippis40 • updated 3.2 years ago by Luo Weijun1.4k
0
votes
2
answers
660
views
2
answers
retrieve kegg pathway abundances from gage analysis
pathways gage kegg written 3.0 years ago by francesca.defilippis40 • updated 3.0 years ago by Luo Weijun1.4k
0
votes
1
answer
1.3k
views
1
answer
1
vote
0
answers
441
views
0
answers
0
votes
3
answers
636
views
3
answers
Gene Symbol with Pathview
visualization pathview bioconductor kegg written 2.4 years ago by abhinavbn0 • updated 2.4 years ago by Luo Weijun1.4k
2
votes
1
answer
332
views
1
answer
elim method for KEGG pathways?
genesetenrichment kegg elim written 2.3 years ago by jacorvar40 • updated 2.3 years ago by James W. MacDonald45k
0
votes
3
answers
596
views
3
answers
1
vote
1
answer
351
views
1
answer
embed url in pathview images
pathview R kegg graphviz pdf written 2.2 years ago by firstdayonthejob20030 • updated 2.2 years ago by Luo Weijun1.4k
0
votes
2
answers
1.1k
views
2
answers
Pathview None of the genes or compounds mapped to the pathway
pathways pathview kegg empty map written 2.2 years ago by Dani0 • updated 2.2 years ago by Luo Weijun1.4k
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