4
votes
3
answers
5.7k
views
3
answers
Packages for GO and KEGG analysis on RNAseq data
go goseq gage kegg written 4.1 years ago by Merienne Nicolas120 • updated 4.0 years ago by Gordon Smyth35k
0
votes
1
answer
860
views
1
answer
Incomplete gene IDs in KEGG pathway testing
gostats kegg written 3.9 years ago by willmacnair0 • updated 3.9 years ago by James W. MacDonald48k
1
vote
2
answers
788
views
2
answers
GeneAnswer for bacteria metagenomes
geneanswers kegg metagenome written 3.9 years ago by francesca.defilippis40 • updated 2.3 years ago by Guangchuang Yu1.0k
0
votes
2
answers
4.1k
views
2
answers
0
votes
8
answers
3.0k
views
8
answers
gage pathways enrichment analysis
pathways gage kegg written 3.9 years ago by francesca.defilippis40 • updated 3.9 years ago by Luo Weijun1.4k
0
votes
2
answers
780
views
2
answers
retrieve kegg pathway abundances from gage analysis
pathways gage kegg written 3.6 years ago by francesca.defilippis40 • updated 3.6 years ago by Luo Weijun1.4k
4
votes
5
answers
1.1k
views
5
answers
0
votes
1
answer
1.6k
views
1
answer
1
vote
0
answers
542
views
0
answers
0
votes
3
answers
828
views
3
answers
Gene Symbol with Pathview
visualization pathview bioconductor kegg written 3.0 years ago by abhinavbn0 • updated 3.0 years ago by Luo Weijun1.4k
2
votes
1
answer
393
views
1
answer
elim method for KEGG pathways?
genesetenrichment kegg elim written 2.9 years ago by jacorvar40 • updated 2.9 years ago by James W. MacDonald48k
5
votes
1
answer
1.4k
views
1
answer
0
votes
3
answers
759
views
3
answers
1
vote
1
answer
420
views
1
answer
embed url in pathview images
pathview R kegg graphviz pdf written 2.8 years ago by firstdayonthejob20030 • updated 2.8 years ago by Luo Weijun1.4k
0
votes
2
answers
1.5k
views
2
answers
Pathview None of the genes or compounds mapped to the pathway
pathways pathview kegg empty map written 2.8 years ago by Dani0 • updated 2.8 years ago by Luo Weijun1.4k
1
vote
2
answers
554
views
2
answers
0
votes
1
answer
511
views
1
answer
Using Gage and pathview with previously processed data
rnaseq gage pathview R kegg written 2.6 years ago by bsguida0 • updated 2.6 years ago by Luo Weijun1.4k
0
votes
1
answer
571
views
1
answer
0
votes
0
answers
370
views
0
answers
1
vote
1
answer
500
views
1
answer
Using pathview with uncommon species leads to Errors
rnaseq pathview kegg data visualization written 2.2 years ago by rafre0 • updated 2.2 years ago by Luo Weijun1.4k
0
votes
1
answer
542
views
1
answer
0
votes
0
answers
303
views
0
answers
Retrieve KEGG from protein GI
keggrest R kegg written 22 months ago by felipelira30
2
votes
4
answers
641
views
4
answers
0
votes
1
answer
413
views
1
answer
Accessing KEGG (errors w/ KEGGREST)
keggrest kegg written 21 months ago by sampsonj740 • updated 21 months ago by Gordon Smyth35k
1
vote
1
answer
351
views
1
answer
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