4
votes
3
answers
5.4k
views
3
answers
Packages for GO and KEGG analysis on RNAseq data
go goseq gage kegg written 3.8 years ago by Merienne Nicolas120 • updated 3.7 years ago by Gordon Smyth34k
0
votes
2
answers
3.9k
views
2
answers
0
votes
8
answers
2.8k
views
8
answers
gage pathways enrichment analysis
pathways gage kegg written 3.7 years ago by francesca.defilippis40 • updated 3.6 years ago by Luo Weijun1.4k
0
votes
1
answer
1.5k
views
1
answer
0
votes
2
answers
1.3k
views
2
answers
Pathview None of the genes or compounds mapped to the pathway
pathways pathview kegg empty map written 2.6 years ago by Dani0 • updated 2.5 years ago by Luo Weijun1.4k
4
votes
1
answer
1.3k
views
1
answer
4
votes
5
answers
1.1k
views
5
answers
0
votes
1
answer
829
views
1
answer
Incomplete gene IDs in KEGG pathway testing
gostats kegg written 3.7 years ago by willmacnair0 • updated 3.7 years ago by James W. MacDonald46k
0
votes
3
answers
744
views
3
answers
Gene Symbol with Pathview
visualization pathview bioconductor kegg written 2.7 years ago by abhinavbn0 • updated 2.7 years ago by Luo Weijun1.4k
0
votes
2
answers
734
views
2
answers
retrieve kegg pathway abundances from gage analysis
pathways gage kegg written 3.4 years ago by francesca.defilippis40 • updated 3.4 years ago by Luo Weijun1.4k
1
vote
2
answers
732
views
2
answers
GeneAnswer for bacteria metagenomes
geneanswers kegg metagenome written 3.7 years ago by francesca.defilippis40 • updated 2.0 years ago by Guangchuang Yu1.0k
0
votes
3
answers
717
views
3
answers
1
vote
2
answers
578
views
2
answers
Pathview pathview kegg.native=TRUE throws error in img
rnaseq pathview error bioconductor kegg written 16 months ago by guillermo.marco30 • updated 8 months ago by map208510
2
votes
4
answers
561
views
4
answers
1
vote
2
answers
528
views
2
answers
0
votes
1
answer
516
views
1
answer
1
vote
0
answers
502
views
0
answers
0
votes
1
answer
497
views
1
answer
How to use topGO and KEGG with de-novo species
limma topgo edger kegg kegga written 10 months ago by mictadlo0 • updated 10 months ago by Gordon Smyth34k
0
votes
1
answer
483
views
1
answer
0
votes
1
answer
482
views
1
answer
Using Gage and pathview with previously processed data
rnaseq gage pathview R kegg written 2.4 years ago by bsguida0 • updated 2.4 years ago by Luo Weijun1.4k
1
vote
1
answer
438
views
1
answer
Using pathview with uncommon species leads to Errors
rnaseq pathview kegg data visualization written 24 months ago by rafre0 • updated 24 months ago by Luo Weijun1.4k
1
vote
1
answer
389
views
1
answer
embed url in pathview images
pathview R kegg graphviz pdf written 2.6 years ago by firstdayonthejob20030 • updated 2.6 years ago by Luo Weijun1.4k
2
votes
1
answer
370
views
1
answer
elim method for KEGG pathways?
genesetenrichment kegg elim written 2.6 years ago by jacorvar40 • updated 2.6 years ago by James W. MacDonald46k
0
votes
1
answer
365
views
1
answer
Accessing KEGG (errors w/ KEGGREST)
keggrest kegg written 18 months ago by sampsonj740 • updated 18 months ago by Gordon Smyth34k
0
votes
0
answers
341
views
0
answers
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