4
votes
3
answers
4.4k
views
3
answers
Packages for GO and KEGG analysis on RNAseq data
go goseq gage kegg written 3.2 years ago by Merienne Nicolas120 • updated 3.1 years ago by Gordon Smyth32k
0
votes
2
answers
3.2k
views
2
answers
0
votes
8
answers
2.3k
views
8
answers
gage pathways enrichment analysis
pathways gage kegg written 3.0 years ago by francesca.defilippis40 • updated 3.0 years ago by Luo Weijun1.4k
0
votes
1
answer
1.2k
views
1
answer
0
votes
2
answers
988
views
2
answers
Pathview None of the genes or compounds mapped to the pathway
pathways pathview kegg empty map written 23 months ago by Dani0 • updated 23 months ago by Luo Weijun1.4k
4
votes
1
answer
953
views
1
answer
4
votes
5
answers
911
views
5
answers
0
votes
1
answer
717
views
1
answer
Incomplete gene IDs in KEGG pathway testing
gostats kegg written 3.0 years ago by willmacnair0 • updated 3.0 years ago by James W. MacDonald45k
1
vote
2
answers
602
views
2
answers
GeneAnswer for bacteria metagenomes
geneanswers kegg metagenome written 3.0 years ago by francesca.defilippis40 • updated 16 months ago by Guangchuang Yu800
0
votes
2
answers
601
views
2
answers
retrieve kegg pathway abundances from gage analysis
pathways gage kegg written 2.7 years ago by francesca.defilippis40 • updated 2.7 years ago by Luo Weijun1.4k
0
votes
3
answers
566
views
3
answers
Gene Symbol with Pathview
visualization pathview bioconductor kegg written 2.1 years ago by abhinavbn0 • updated 2.1 years ago by Luo Weijun1.4k
0
votes
3
answers
521
views
3
answers
1
vote
2
answers
431
views
2
answers
0
votes
1
answer
398
views
1
answer
Using Gage and pathview with previously processed data
rnaseq gage pathview R kegg written 21 months ago by bsguida0 • updated 21 months ago by Luo Weijun1.4k
1
vote
0
answers
394
views
0
answers
0
votes
1
answer
369
views
1
answer
0
votes
1
answer
340
views
1
answer
1
vote
1
answer
331
views
1
answer
embed url in pathview images
pathview R kegg graphviz pdf written 23 months ago by firstdayonthejob20030 • updated 23 months ago by Luo Weijun1.4k
1
vote
2
answers
315
views
2
answers
Pathview pathview kegg.native=TRUE throws error in img
rnaseq pathview error bioconductor kegg written 8 months ago by guillermo.marco30 • updated 20 days ago by map208510
2
votes
4
answers
313
views
4
answers
1
vote
1
answer
301
views
1
answer
Using pathview with uncommon species leads to Errors
rnaseq pathview kegg data visualization written 16 months ago by rafre0 • updated 16 months ago by Luo Weijun1.4k
2
votes
1
answer
295
views
1
answer
elim method for KEGG pathways?
genesetenrichment kegg elim written 24 months ago by jacorvar20 • updated 24 months ago by James W. MacDonald45k
0
votes
1
answer
265
views
1
answer
How to use topGO and KEGG with de-novo species
limma topgo edger kegg kegga written 10 weeks ago by mictadlo0 • updated 10 weeks ago by Gordon Smyth32k
0
votes
0
answers
250
views
0
answers
0
votes
1
answer
240
views
1
answer
Accessing KEGG (errors w/ KEGGREST)
keggrest kegg written 10 months ago by sampsonj740 • updated 10 months ago by Gordon Smyth32k
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