Showing: kegga • reset
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0
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210
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1
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UnProducible error with goana and kegga function
limma goana kegga written 10 weeks ago by Ahdee • 40 • updated 10 weeks ago by Gordon Smyth ♦ 39k
5
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2
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230
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2
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Function kegga not working for species other than the conventional ones - Pathways do not overlap with universe
limma kegg pathway analysis kegga written 7 months ago by Raito92 • 40 • updated 7 months ago by Gordon Smyth ♦ 39k
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Is there a way to specify the pathway level of classification that we want in kegga function from edgeR?
edger kegg kegga written 16 months ago by bernsmq • 0 • updated 16 months ago by James W. MacDonald ♦ 52k
3
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432
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1
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How to create a customized OrgDb in order to perform kegga analysis?
orgdb limma kegga written 21 months ago by baus87 • 0 • updated 21 months ago by Gordon Smyth ♦ 39k
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718
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1
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Using kegga and goana for Plants
edger goana kegga written 22 months ago by jfreixas • 0 • updated 22 months ago by Gordon Smyth ♦ 39k
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1.0k
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How to use topGO and KEGG with de-novo species
limma topgo edger kegg kegga written 2.3 years ago by mictadlo • 0 • updated 2.3 years ago by Gordon Smyth ♦ 39k
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2
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560
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kegga() p-value calculated differently in different edgeR versions
edger kegga written 2.5 years ago by cronanz • 0 • updated 2.4 years ago by Gordon Smyth ♦ 39k
0
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513
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prior.prob has opposite effects in goana and kegga?
limma goana kegga missmethyl gometh written 2.6 years ago by Jenny Drnevich • 1.9k • updated 2.4 years ago by Gordon Smyth ♦ 39k
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How to select the genes mapped to an enriched KEGG pathway (kegga)
kegga written 3.1 years ago by mat149 • 40 • updated 3.0 years ago by Gordon Smyth ♦ 39k
1
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2
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815
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KEGG pathway analysis on a predefined set of genes (with my own annotation)?
limma kegga written 3.1 years ago by miyakokodama • 0 • updated 3.1 years ago by Gordon Smyth ♦ 39k
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Error in sqliteSendQuery(conn, statement): error in statement: no such table: c.probes
limma annotationdbi edger annotationhub kegga written 3.7 years ago by Rinaldo Bertossa • 20 • updated 3.4 years ago by cagenet34 • 20
2
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3
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1.7k
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3
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Timeout error in kegga() using edgeR
edger keggrest kegga written 3.9 years ago by Likai Mao • 30
6
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1
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2.3k
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how to use "non-standard" species for KEGG / GO analysis in limma?
limma kegga goanna written 3.9 years ago by Guido Hooiveld • 2.5k • updated 3.9 years ago by Gordon Smyth ♦ 39k
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