2
votes
2
answers
108
views
2
answers
1
vote
1
answer
58
views
1
answer
topTable error: data.frame(logFC = M[top]) : row names contain missing values
limma written 7 weeks ago by owen.whitley0 • updated 7 weeks ago by Aaron Lun20k
0
votes
1
answer
65
views
1
answer
Getting Significance for second factor (bioreplicate/subject) when using limma.
limma anova written 7 weeks ago by wewolski10 • updated 7 weeks ago by Aaron Lun20k
0
votes
0
answers
68
views
0
answers
2
votes
1
answer
92
views
1
answer
How can I check the quality of code I have written? How to QC?
limma R bioconductor written 7 weeks ago by BIOAWY10 • updated 7 weeks ago by Martin Morgan ♦♦ 22k
2
votes
1
answer
160
views
1
answer
paired two groups comparison using limma
limma paired test written 7 weeks ago by fansili201310 • updated 7 weeks ago by Aaron Lun20k
2
votes
2
answers
124
views
2
answers
0
votes
1
answer
232
views
1
answer
3
votes
1
answer
107
views
1
answer
Calling svaseq() multiple times
limma edger sva svaseq written 8 weeks ago by cats_dogs0 • updated 8 weeks ago by Ryan C. Thompson6.8k
6
votes
1
answer
174
views
1
answer
Batch Correction with only one sample in a batch
limma deseq2 batch effect written 9 weeks ago by i.sudbery10 • updated 9 weeks ago by Ryan C. Thompson6.8k
0
votes
1
answer
155
views
1
answer
question about "write.fit" function in limma-voom
limma write.fit method nestedf written 9 months ago by aec40 • updated 9 weeks ago by Gordon Smyth34k
2
votes
1
answer
111
views
1
answer
T-test in limma
limma t test written 9 weeks ago by zhang.jianhai0 • updated 9 weeks ago by Gordon Smyth34k
0
votes
1
answer
110
views
1
answer
LRT on microarray data
limma written 10 weeks ago by ssabunc10 • updated 10 weeks ago by Gordon Smyth34k
1
vote
1
answer
123
views
1
answer
Error message with Voom with blocked design matrix
limma voom blocked design written 10 weeks ago by raf420 • updated 10 weeks ago by Gordon Smyth34k
0
votes
2
answers
95
views
2
answers
Limma design matrix
limma design matrix written 10 weeks ago by R40 • updated 10 weeks ago by Gordon Smyth34k
3
votes
2
answers
160
views
2
answers
Limma - how to manage huge differences in library sizes
limma written 10 weeks ago by baus870 • updated 10 weeks ago by Gordon Smyth34k
1
vote
1
answer
92
views
1
answer
3
votes
1
answer
133
views
1
answer
0
votes
1
answer
191
views
1
answer
TPM data Differential expression analysis
limma edger differential gene expression written 11 weeks ago by ghmdsr0 • updated 10 weeks ago by Gordon Smyth34k
0
votes
1
answer
123
views
1
answer
Interpretation of p-value plot
limma differential expression p values written 11 weeks ago by karlien.springael0 • updated 11 weeks ago by Gordon Smyth34k
7
votes
2
answers
125
views
2
answers
Question on performing/interpretation results ANOVA-like analysis using limma
limma written 11 weeks ago by Guido Hooiveld2.3k • updated 11 weeks ago by Gordon Smyth34k
2
votes
1
answer
111
views
1
answer
Absence of significant gene in DEG list
microarray limma written 12 weeks ago by nia10 • updated 12 weeks ago by Aaron Lun20k
2
votes
2
answers
125
views
2
answers
Compare groups of different RNAseq sets
limma batch effect written 12 weeks ago by b.nota300 • updated 12 weeks ago by Gordon Smyth34k
1
vote
2
answers
195
views
2
answers
Comparison between limma and edgeR of reads ratio
limma edger offset written 3 months ago by catpaw.tw0 • updated 12 weeks ago by Gordon Smyth34k
2
votes
1
answer
85
views
1
answer
Limma model for paired and pool together
rnaseq limma design written 3 months ago by b.nota300 • updated 3 months ago by Ryan C. Thompson6.8k
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