6
votes
0
answers
1.1k
views
7 follow
0
answers
13
votes
2
answers
3.5k
views
9 follow
2
answers
using duplicateCorrelation with limma+voom for RNA-seq data
limma voom written 4.1 years ago by John Blischak140 • updated 3.1 years ago by Gordon Smyth33k
11
votes
2
answers
2.5k
views
9 follow
2
answers
6
votes
0
answers
819
views
5 follow
0
answers
8
votes
1
answer
3.8k
views
7 follow
1
answer
Removing batch effects with sva and combat using the sva package
regression limma sva written 6.5 years ago by Jeff Leek520 • updated 6.5 years ago by Andrew Teschendorff60
17
votes
4
answers
4.2k
views
10 follow
4
answers
Removing continuous covariate effects in limma analysis
microarray limma written 3.2 years ago by Pauly Lin80 • updated 9 months ago by Gordon Smyth33k
12
votes
1
answer
2.5k
views
6 follow
1
answer
Understanding contrasts limma
limma design and contrast matrix written 2.7 years ago by Andy9160 • updated 2.7 years ago by Aaron Lun19k
11
votes
1
answer
516
views
7 follow
1
answer
How to remove more than two batches in my data-sets
rnaseq limma removebatcheffect() written 23 months ago by yi.huang30 • updated 23 months ago by Gordon Smyth33k
3
votes
1
answer
455
views
6 follow
1
answer
1
vote
0
answers
715
views
0
answers
4
votes
1
answer
1.2k
views
1
answer
missing value handling in limma
limma written 14.0 years ago by xiaocui zhu70 • updated 14.0 years ago by Gordon Smyth33k
9
votes
0
answers
8.2k
views
0
answers
1
vote
1
answer
1.5k
views
1
answer
makeContrasts in limma
limma written 13.0 years ago by He, Yiwen NIH/CIT360 • updated 13.0 years ago by Gordon Smyth33k
1
vote
2
answers
1.3k
views
2
answers
Limma: correct calculation of B statistics (log odds)
microarray genetics limma limmagui written 12.2 years ago by Gordon Smyth33k • updated 12.2 years ago by J.delasHeras@ed.ac.uk1.9k
1
vote
1
answer
2.6k
views
1
answer
a question on creating model.matrix using limma
limma written 12.0 years ago by Srinivas Iyyer590 • updated 12.0 years ago by James W. MacDonald46k
1
vote
0
answers
479
views
0
answers
1
vote
1
answer
325
views
1
answer
Separate Channel Analysis of Two-Color Data
limma written 11.5 years ago by Gordon Smyth33k • updated 11.5 years ago by Naomi Altman6.0k
2
votes
0
answers
1.9k
views
0
answers
3
votes
1
answer
262
views
1
answer
model.matrix()
limma written 9.9 years ago by Yisong Zhen200 • updated 9.9 years ago by Gordon Smyth33k
2
votes
0
answers
534
views
0
answers
Limma: NA handling in contrasts.fit
limma written 9.2 years ago by Gordon Smyth33k
1
vote
0
answers
522
views
0
answers
4
votes
4
answers
849
views
4
answers
limma for spectral counts
limma written 7.7 years ago by Yolande Tra120 • updated 7.7 years ago by Pavelka, Norman70
2
votes
0
answers
1.1k
views
0
answers
1
vote
1
answer
1.0k
views
1
answer
Limma model parameters design, combining a paired with a factorial design
limma written 6.7 years ago by john herbert550 • updated 6.7 years ago by James W. MacDonald46k
1
vote
1
answer
2.5k
views
1
answer
LIMMA - summarization of Illumina probes for same gene
probe affy limma beadarray written 6.3 years ago by Gordon Smyth33k • updated 6.3 years ago by Kripa R180
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