2
votes
2
answers
7.3k
views
2
answers
Limma design and contrast matrix question.
microarray regression limma written 3.8 years ago by Matthew Thornton280 • updated 3.8 years ago by James W. MacDonald45k
0
votes
2
answers
6.8k
views
2
answers
limma, FDR, and p.adjust
limma written 12.9 years ago by Kimpel, Mark W890 • updated 12.9 years ago by Gordon Smyth32k
6
votes
2
answers
6.7k
views
5 follow
2
answers
Differential expression of RNA-seq data using limma and voom()
limma written 4.0 years ago by Jon Bråte130 • updated 16 months ago by Gordon Smyth32k
6
votes
0
answers
5.7k
views
0
answers
11
votes
3
answers
5.1k
views
9 follow
3
answers
Nanostring analysis with limma
limma nanostring written 2.6 years ago by mali salmon320 • updated 2.6 years ago by ker610
6
votes
3
answers
4.8k
views
3
answers
18
votes
3
answers
4.6k
views
3
answers
0
votes
2
answers
4.3k
views
2
answers
DESeq2 vs limma/voom: PCA completely different. How to proceed?
limma deseq2 written 4.6 years ago by Stephen Turner260 • updated 4.6 years ago by Simon Anders3.4k
4
votes
2
answers
4.0k
views
2
answers
limma p-value and adjusted p-value meaning
limma written 2.2 years ago by arfranco120
2
votes
3
answers
3.9k
views
3
answers
Limma: how to get same output as topTable but for all the genes ?
limma toptable written 9.0 years ago by Daren Tan150 • updated 4 months ago by Gordon Smyth32k
12
votes
2
answers
3.7k
views
5 follow
2
answers
1
vote
3
answers
3.6k
views
3
answers
0
votes
1
answer
3.6k
views
1
answer
0
votes
2
answers
3.3k
views
2
answers
3
votes
1
answer
3.3k
views
1
answer
Ballgown vs (voom,edgeR,DESeq,limma)
rnaseq limma differential expression voom written 2.9 years ago by François Lefebvre40 • updated 2.8 years ago by Alyssa Frazee110
7
votes
1
answer
3.3k
views
7 follow
1
answer
Removing batch effects with sva and combat using the sva package
regression limma sva written 5.9 years ago by Jeff Leek490 • updated 5.9 years ago by Andrew Teschendorff60
2
votes
1
answer
3.3k
views
1
answer
convert data in to expression set
limma convert written 4.4 years ago by Nikul Soni80 • updated 4.4 years ago by Jeremy Ng170
14
votes
4
answers
3.2k
views
9 follow
4
answers
Removing continuous covariate effects in limma analysis
microarray limma written 2.7 years ago by Pauly Lin60 • updated 10 weeks ago by Gordon Smyth32k
3
votes
2
answers
3.1k
views
2
answers
limma voom accessing normalised counts tables
geneexpression rnaseq limma voom counts written 3.1 years ago by Peter Crisp10 • updated 3.1 years ago by Steve Lianoglou12k
3
votes
4
answers
3.1k
views
4
answers
Volcano plot labeling troubles
limma volcanoplot written 3.1 years ago by mccallionc4030 • updated 4 months ago by Gordon Smyth32k
0
votes
1
answer
3.0k
views
1
answer
LIMMA: Error in rowMeans(y$exprs, na.rm=TRUE):'x' must be numeric
limma written 5.1 years ago by Kripa R180 • updated 5.1 years ago by James W. MacDonald45k
1
vote
1
answer
2.9k
views
1
answer
Limma Design for Paired Samples Question
limma written 5.4 years ago by zeynep özkeserli140 • updated 5.4 years ago by Gordon Smyth32k
2
votes
1
answer
2.8k
views
1
answer
Block design with voom and limma for multi-level experiment
limma written 4.5 years ago by Guest User12k • updated 4.5 years ago by Charity Law80
1
vote
1
answer
2.8k
views
1
answer
Differential Analysis for gene expression from TCGA (Level 3)
microarray limma tcga written 2.6 years ago by hudacdif0 • updated 2.6 years ago by Steve Lianoglou12k
2
votes
1
answer
2.7k
views
1
answer
T-test for microarray data
microarray limma t.test written 2.7 years ago by eslamias0 • updated 2.7 years ago by Martin Morgan ♦♦ 20k
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