2
votes
2
answers
9.2k
views
2
answers
Limma design and contrast matrix question.
microarray regression limma written 4.4 years ago by Matthew Thornton290 • updated 4.4 years ago by James W. MacDonald46k
8
votes
2
answers
8.6k
views
5 follow
2
answers
Differential expression of RNA-seq data using limma and voom()
limma written 4.6 years ago by Jon Bråte150 • updated 23 months ago by Gordon Smyth33k
9
votes
0
answers
8.2k
views
0
answers
0
votes
2
answers
7.9k
views
2
answers
limma, FDR, and p.adjust
limma written 13.5 years ago by Kimpel, Mark W890 • updated 13.5 years ago by Gordon Smyth33k
6
votes
3
answers
7.3k
views
3
answers
18
votes
3
answers
6.1k
views
3
answers
12
votes
3
answers
5.9k
views
10 follow
3
answers
Nanostring analysis with limma
limma nanostring written 3.2 years ago by mali salmon320 • updated 3.1 years ago by ker610
12
votes
2
answers
5.5k
views
5 follow
2
answers
5
votes
2
answers
5.4k
views
2
answers
limma p-value and adjusted p-value meaning
limma written 2.8 years ago by arfranco120
2
votes
2
answers
5.1k
views
2
answers
DESeq2 vs limma/voom: PCA completely different. How to proceed?
limma deseq2 written 5.2 years ago by Stephen Turner260 • updated 5.2 years ago by Simon Anders3.5k
4
votes
3
answers
5.1k
views
3
answers
Limma: how to get same output as topTable but for all the genes ?
limma toptable written 9.6 years ago by Daren Tan160 • updated 11 months ago by Gordon Smyth33k
2
votes
1
answer
4.9k
views
1
answer
convert data in to expression set
limma convert written 5.0 years ago by Nikul Soni80 • updated 5.0 years ago by Jeremy Ng170
1
vote
3
answers
4.6k
views
3
answers
0
votes
1
answer
4.3k
views
1
answer
5
votes
1
answer
4.2k
views
5 follow
1
answer
Ballgown vs (voom,edgeR,DESeq,limma)
rnaseq limma differential expression voom written 3.4 years ago by François Lefebvre50 • updated 3.4 years ago by Alyssa Frazee170
17
votes
4
answers
4.2k
views
10 follow
4
answers
Removing continuous covariate effects in limma analysis
microarray limma written 3.2 years ago by Pauly Lin80 • updated 9 months ago by Gordon Smyth33k
8
votes
1
answer
3.8k
views
7 follow
1
answer
Removing batch effects with sva and combat using the sva package
regression limma sva written 6.5 years ago by Jeff Leek520 • updated 6.5 years ago by Andrew Teschendorff60
3
votes
2
answers
3.8k
views
2
answers
limma voom accessing normalised counts tables
geneexpression rnaseq limma voom counts written 3.6 years ago by Peter Crisp10 • updated 3.6 years ago by Steve Lianoglou12k
0
votes
1
answer
3.8k
views
1
answer
LIMMA: Error in rowMeans(y$exprs, na.rm=TRUE):'x' must be numeric
limma written 5.7 years ago by Kripa R180 • updated 5.7 years ago by James W. MacDonald46k
4
votes
1
answer
3.7k
views
1
answer
Limma Design for Paired Samples Question
limma written 5.9 years ago by zeynep özkeserli160 • updated 5.9 years ago by Gordon Smyth33k
0
votes
2
answers
3.6k
views
2
answers
7
votes
3
answers
3.6k
views
3
answers
3
votes
4
answers
3.6k
views
4
answers
Volcano plot labeling troubles
limma volcanoplot written 3.7 years ago by mccallionc4030 • updated 11 months ago by Gordon Smyth33k
13
votes
2
answers
3.5k
views
9 follow
2
answers
using duplicateCorrelation with limma+voom for RNA-seq data
limma voom written 4.1 years ago by John Blischak140 • updated 3.1 years ago by Gordon Smyth33k
2
votes
1
answer
3.4k
views
1
answer
Block design with voom and limma for multi-level experiment
limma written 5.1 years ago by Guest User12k • updated 5.1 years ago by Charity Law80
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