11
votes
0
answers
11k
views
5 follow
0
answers
2
votes
2
answers
11k
views
2
answers
Limma design and contrast matrix question.
microarray regression limma written 4.9 years ago by Matthew Thornton290 • updated 4.9 years ago by James W. MacDonald48k
8
votes
2
answers
11k
views
5 follow
2
answers
Differential expression of RNA-seq data using limma and voom()
limma written 5.0 years ago by Jon Bråte150 • updated 2.4 years ago by Gordon Smyth35k
7
votes
3
answers
9.7k
views
3
answers
0
votes
2
answers
8.8k
views
2
answers
limma, FDR, and p.adjust
limma written 14.0 years ago by Kimpel, Mark W890 • updated 14.0 years ago by Gordon Smyth35k
18
votes
3
answers
7.8k
views
3
answers
15
votes
2
answers
7.2k
views
8 follow
2
answers
5
votes
2
answers
6.6k
views
2
answers
limma p-value and adjusted p-value meaning
limma written 3.3 years ago by arfranco120
14
votes
3
answers
6.5k
views
12 follow
3
answers
Nanostring analysis with limma
limma nanostring written 3.6 years ago by mali salmon330 • updated 3.6 years ago by ker6110
2
votes
1
answer
6.1k
views
1
answer
convert data in to expression set
limma convert written 5.5 years ago by Nikul Soni80 • updated 5.5 years ago by Jeremy Ng170
4
votes
3
answers
6.0k
views
3
answers
Limma: how to get same output as topTable but for all the genes ?
limma toptable written 10.0 years ago by Daren Tan160 • updated 16 months ago by Gordon Smyth35k
2
votes
2
answers
5.9k
views
2
answers
DESeq2 vs limma/voom: PCA completely different. How to proceed?
limma deseq2 written 5.6 years ago by Stephen Turner260 • updated 5.6 years ago by Simon Anders3.5k
1
vote
3
answers
5.3k
views
3
answers
18
votes
4
answers
5.0k
views
11 follow
4
answers
Removing continuous covariate effects in limma analysis
microarray limma written 3.7 years ago by Pauly Lin80 • updated 15 months ago by Gordon Smyth35k
0
votes
1
answer
4.8k
views
1
answer
5
votes
1
answer
4.7k
views
5 follow
1
answer
Ballgown vs (voom,edgeR,DESeq,limma)
rnaseq limma differential expression voom written 3.9 years ago by François Lefebvre50 • updated 3.9 years ago by Alyssa Frazee200
4
votes
1
answer
4.5k
views
1
answer
Limma Design for Paired Samples Question
limma written 6.4 years ago by zeynep özkeserli160 • updated 6.4 years ago by Gordon Smyth35k
3
votes
2
answers
4.4k
views
2
answers
limma voom accessing normalised counts tables
geneexpression rnaseq limma voom counts written 4.1 years ago by Peter Crisp10 • updated 4.1 years ago by Steve Lianoglou12k
14
votes
2
answers
4.4k
views
9 follow
2
answers
using duplicateCorrelation with limma+voom for RNA-seq data
limma voom written 4.6 years ago by John Blischak150 • updated 3.6 years ago by Gordon Smyth35k
0
votes
1
answer
4.3k
views
1
answer
LIMMA: Error in rowMeans(y$exprs, na.rm=TRUE):'x' must be numeric
limma written 6.2 years ago by Kripa R180 • updated 6.2 years ago by James W. MacDonald48k
5
votes
1
answer
4.2k
views
1
answer
7
votes
3
answers
4.2k
views
3
answers
16
votes
2
answers
4.1k
views
6 follow
2
answers
8
votes
1
answer
4.1k
views
7 follow
1
answer
Removing batch effects with sva and combat using the sva package
regression limma sva written 7.0 years ago by Jeff Leek520 • updated 7.0 years ago by Andrew Teschendorff60
8
votes
1
answer
4.1k
views
1
answer
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