9
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0
answers
8.8k
views
0
answers
13
votes
2
answers
3.8k
views
9 follow
2
answers
using duplicateCorrelation with limma+voom for RNA-seq data
limma voom written 4.3 years ago by John Blischak140 • updated 3.3 years ago by Gordon Smyth34k
6
votes
0
answers
847
views
5 follow
0
answers
8
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1
answer
3.9k
views
7 follow
1
answer
Removing batch effects with sva and combat using the sva package
regression limma sva written 6.7 years ago by Jeff Leek520 • updated 6.7 years ago by Andrew Teschendorff60
6
votes
0
answers
1.1k
views
7 follow
0
answers
17
votes
4
answers
4.4k
views
10 follow
4
answers
Removing continuous covariate effects in limma analysis
microarray limma written 3.4 years ago by Pauly Lin80 • updated 11 months ago by Gordon Smyth34k
10
votes
1
answer
2.0k
views
5 follow
1
answer
Bootstrap confidence intervals on RNA-seq expression from Kallisto
rnaseq limma edger deseq2 voom written 3.2 years ago by Sean Davis21k • updated 11 months ago by Paul Harrison60
24
votes
3
answers
2.6k
views
8 follow
3
answers
voom for spectral counts
proteomics limma massspectrometry voom spectral counts written 3.6 years ago by Ben Neely40 • updated 3.6 years ago by Gordon Smyth34k
17
votes
2
answers
1.7k
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7 follow
2
answers
Limma camera function never gives any differentially expressed gene sets
limma written 3.1 years ago by chris86380 • updated 12 months ago by misterrandyclark0
4
votes
1
answer
1.2k
views
1
answer
missing value handling in limma
limma written 14.2 years ago by xiaocui zhu70 • updated 14.2 years ago by Gordon Smyth34k
11
votes
2
answers
2.7k
views
9 follow
2
answers
5
votes
1
answer
490
views
5 follow
1
answer
How to submit limma patch
limma written 3.4 years ago by alexgutteridge50 • updated 3.4 years ago by James W. MacDonald47k
19
votes
2
answers
2.0k
views
8 follow
2
answers
12
votes
1
answer
2.8k
views
6 follow
1
answer
Understanding contrasts limma
limma design and contrast matrix written 2.9 years ago by Andy9160 • updated 2.9 years ago by Aaron Lun20k
11
votes
1
answer
537
views
7 follow
1
answer
How to remove more than two batches in my data-sets
rnaseq limma removebatcheffect() written 2.1 years ago by yi.huang30 • updated 2.1 years ago by Gordon Smyth34k
2
votes
0
answers
2.1k
views
0
answers
4
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3
answers
5.4k
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3
answers
Limma: how to get same output as topTable but for all the genes ?
limma toptable written 9.7 years ago by Daren Tan160 • updated 13 months ago by Gordon Smyth34k
2
votes
0
answers
558
views
0
answers
Limma: NA handling in contrasts.fit
limma written 9.4 years ago by Gordon Smyth34k
2
votes
0
answers
1.1k
views
0
answers
4
votes
1
answer
4.0k
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1
answer
Limma Design for Paired Samples Question
limma written 6.1 years ago by zeynep √∂zkeserli160 • updated 6.1 years ago by Gordon Smyth34k
2
votes
0
answers
1.0k
views
0
answers
3
votes
1
answer
863
views
1
answer
arrayQualityMetrics for Agilent one color data
normalization limma arrayqualitymetrics written 4.7 years ago by Yong Li50 • updated 4.7 years ago by James W. MacDonald47k
4
votes
1
answer
491
views
5 follow
1
answer
simultaneous use of robust and weighting methods in limma.
limma robust arrayweights written 4.7 years ago by Richard Friedman80 • updated 3.7 years ago by Gordon Smyth34k
6
votes
1
answer
1.7k
views
5 follow
1
answer
2
votes
2
answers
9.7k
views
2
answers
Limma design and contrast matrix question.
microarray regression limma written 4.6 years ago by Matthew Thornton290 • updated 4.6 years ago by James W. MacDonald47k
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