8
votes
0
answers
7.5k
views
0
answers
13
votes
2
answers
3.2k
views
9 follow
2
answers
using duplicateCorrelation with limma+voom for RNA-seq data
limma voom written 3.9 years ago by John Blischak140 • updated 3.0 years ago by Gordon Smyth33k
6
votes
0
answers
762
views
5 follow
0
answers
6
votes
0
answers
1.0k
views
7 follow
0
answers
7
votes
1
answer
3.7k
views
7 follow
1
answer
Removing batch effects with sva and combat using the sva package
regression limma sva written 6.4 years ago by Jeff Leek510 • updated 6.4 years ago by Andrew Teschendorff60
17
votes
4
answers
3.9k
views
10 follow
4
answers
Removing continuous covariate effects in limma analysis
microarray limma written 3.1 years ago by Pauly Lin80 • updated 7 months ago by Gordon Smyth33k
10
votes
1
answer
1.9k
views
5 follow
1
answer
Bootstrap confidence intervals on RNA-seq expression from Kallisto
rnaseq limma edger deseq2 voom written 2.9 years ago by Sean Davis21k • updated 7 months ago by Paul Harrison60
24
votes
3
answers
2.4k
views
8 follow
3
answers
voom for spectral counts
proteomics limma massspectrometry voom spectral counts written 3.2 years ago by Ben Neely40 • updated 3.2 years ago by Gordon Smyth33k
17
votes
2
answers
1.6k
views
7 follow
2
answers
Limma camera function never gives any differentially expressed gene sets
limma written 2.8 years ago by chris86380 • updated 8 months ago by misterrandyclark0
4
votes
1
answer
1.1k
views
1
answer
missing value handling in limma
limma written 13.9 years ago by xiaocui zhu70 • updated 13.9 years ago by Gordon Smyth33k
11
votes
2
answers
2.4k
views
9 follow
2
answers
5
votes
1
answer
453
views
5 follow
1
answer
How to submit limma patch
limma written 3.1 years ago by alexgutteridge50 • updated 3.1 years ago by James W. MacDonald46k
18
votes
2
answers
1.9k
views
8 follow
2
answers
11
votes
1
answer
490
views
7 follow
1
answer
How to remove more than two batches in my data-sets
rnaseq limma removebatcheffect() written 21 months ago by yi.huang30 • updated 21 months ago by Gordon Smyth33k
2
votes
0
answers
1.6k
views
0
answers
4
votes
3
answers
4.8k
views
3
answers
Limma: how to get same output as topTable but for all the genes ?
limma toptable written 9.4 years ago by Daren Tan160 • updated 9 months ago by Gordon Smyth33k
2
votes
0
answers
506
views
0
answers
Limma: NA handling in contrasts.fit
limma written 9.1 years ago by Gordon Smyth33k
2
votes
0
answers
985
views
0
answers
2
votes
0
answers
961
views
0
answers
3
votes
1
answer
776
views
1
answer
arrayQualityMetrics for Agilent one color data
normalization limma arrayqualitymetrics written 4.4 years ago by Yong Li50 • updated 4.4 years ago by James W. MacDonald46k
4
votes
1
answer
453
views
5 follow
1
answer
simultaneous use of robust and weighting methods in limma.
limma robust arrayweights written 4.4 years ago by Richard Friedman80 • updated 3.4 years ago by Gordon Smyth33k
5
votes
1
answer
1.5k
views
1
answer
2
votes
2
answers
8.7k
views
2
answers
Limma design and contrast matrix question.
microarray regression limma written 4.3 years ago by Matthew Thornton290 • updated 4.3 years ago by James W. MacDonald46k
3
votes
1
answer
742
views
5 follow
1
answer
Blocked design and Surrogate Variables Analsysis(SVA)
limma sva block written 3.5 years ago by kodream20 • updated 3.5 years ago by Jeff Leek510
2
votes
2
answers
1.6k
views
2
answers
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