8
votes
0
answers
6.4k
views
0
answers
11
votes
2
answers
2.8k
views
9 follow
2
answers
using duplicateCorrelation with limma+voom for RNA-seq data
limma voom written 3.7 years ago by John Blischak130 • updated 2.7 years ago by Gordon Smyth32k
6
votes
0
answers
689
views
5 follow
0
answers
6
votes
0
answers
950
views
7 follow
0
answers
7
votes
1
answer
3.5k
views
7 follow
1
answer
Removing batch effects with sva and combat using the sva package
regression limma sva written 6.1 years ago by Jeff Leek490 • updated 6.1 years ago by Andrew Teschendorff60
17
votes
4
answers
3.5k
views
10 follow
4
answers
Removing continuous covariate effects in limma analysis
microarray limma written 2.8 years ago by Pauly Lin80 • updated 4 months ago by Gordon Smyth32k
10
votes
1
answer
1.7k
views
5 follow
1
answer
Bootstrap confidence intervals on RNA-seq expression from Kallisto
rnaseq limma edger deseq2 voom written 2.6 years ago by Sean Davis21k • updated 4 months ago by Paul Harrison60
24
votes
3
answers
2.2k
views
8 follow
3
answers
voom for spectral counts
proteomics limma massspectrometry voom spectral counts written 3.0 years ago by Ben Neely40 • updated 3.0 years ago by Gordon Smyth32k
17
votes
2
answers
1.4k
views
7 follow
2
answers
Limma camera function never gives any differentially expressed gene sets
limma written 2.5 years ago by chris86340 • updated 5 months ago by misterrandyclark0
4
votes
1
answer
1.0k
views
1
answer
missing value handling in limma
limma written 13.6 years ago by xiaocui zhu70 • updated 13.6 years ago by Gordon Smyth32k
11
votes
2
answers
2.1k
views
9 follow
2
answers
5
votes
1
answer
426
views
5 follow
1
answer
How to submit limma patch
limma written 2.8 years ago by alexgutteridge50 • updated 2.8 years ago by James W. MacDonald45k
18
votes
2
answers
1.7k
views
8 follow
2
answers
11
votes
1
answer
444
views
7 follow
1
answer
How to remove more than two batches in my data-sets
rnaseq limma removebatcheffect() written 18 months ago by yi.huang30 • updated 18 months ago by Gordon Smyth32k
2
votes
0
answers
1.3k
views
0
answers
4
votes
3
answers
4.2k
views
3
answers
Limma: how to get same output as topTable but for all the genes ?
limma toptable written 9.2 years ago by Daren Tan160 • updated 6 months ago by Gordon Smyth32k
2
votes
0
answers
457
views
0
answers
Limma: NA handling in contrasts.fit
limma written 8.8 years ago by Gordon Smyth32k
2
votes
0
answers
873
views
0
answers
2
votes
0
answers
874
views
0
answers
3
votes
1
answer
699
views
1
answer
arrayQualityMetrics for Agilent one color data
normalization limma arrayqualitymetrics written 4.1 years ago by Yong Li50 • updated 4.1 years ago by James W. MacDonald45k
4
votes
1
answer
417
views
5 follow
1
answer
simultaneous use of robust and weighting methods in limma.
limma robust arrayweights written 4.1 years ago by Richard Friedman80 • updated 3.1 years ago by Gordon Smyth32k
5
votes
1
answer
1.4k
views
1
answer
2
votes
2
answers
7.8k
views
2
answers
Limma design and contrast matrix question.
microarray regression limma written 4.0 years ago by Matthew Thornton280 • updated 4.0 years ago by James W. MacDonald45k
3
votes
1
answer
702
views
5 follow
1
answer
Blocked design and Surrogate Variables Analsysis(SVA)
limma sva block written 3.2 years ago by kodream20 • updated 3.2 years ago by Jeff Leek490
2
votes
2
answers
1.5k
views
2
answers
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