Showing: methylationreset
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About methylation data processing
methylation written 3.5 years ago by Asma rabe290 • updated 3.5 years ago by Peter Hickey450
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Limma -decideTests interpretation for M-values
limma methylation decidetests written 3.5 years ago by kraiczy10 • updated 3.5 years ago by Sean Davis21k
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minfi sample limit
minfi illumina methylation illimina 450k methylation written 3.4 years ago by igor20 • updated 3.4 years ago by Kasper Daniel Hansen6.4k
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bumphunter beta values
minfi bumphunter methylation written 3.4 years ago by igor20 • updated 3.4 years ago by James W. MacDonald50k
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Error in Matrix
minfi illumina methylation epic microarray written 3.3 years ago by rasii0 • updated 3.3 years ago by Kasper Daniel Hansen6.4k
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Lumi error in importMethylIDAT
lumi illumina methylation written 3.3 years ago by rasii0 • updated 3.3 years ago by James W. MacDonald50k
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Methylation and gene expression data
geneexpression methylation written 3.3 years ago by Asma rabe290 • updated 3.3 years ago by arfranco130
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Normalization starting from beta values in minfi
minfi methylation written 3.2 years ago by Asma rabe290 • updated 3.2 years ago by James W. MacDonald50k
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limma lmFit coefficients and p-values
limma methylation ewas written 3.1 years ago by CPR30 • updated 3.1 years ago by Steve Lianoglou12k
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Error while using ChAMP
champ methylation illuminahumanmethylation450k.db illumina450k written 2.8 years ago by hrishi27n20 • updated 2.8 years ago by Yuan Tian80
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BiSeq. Model beta regression on resampled data.
biseq methylation dmr analysis written 2.6 years ago by jjalmagro0 • updated 2.6 years ago by Katja Hebestreit110
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Epigenetic clock (Horvath): package?
epigenetics minfi methylation illimina 450k methylation written 2.6 years ago by Brian Smith120 • updated 2.4 years ago by Wade Davis60
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champ.load getting filtered RGChannelSet
champ methylation written 2.6 years ago by hrishi27n20 • updated 2.5 years ago by Yuan Tian80
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coef in dmrcate
bumphunter methylation dmrcate epic written 2.3 years ago by yoursbassanio0 • updated 2.3 years ago by James W. MacDonald50k
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should i include PCs or MDSs as covariates in methylation study?
limma methylation R mds covariate written 2.3 years ago by ZoeChing0 • updated 2.3 years ago by Aaron Lun24k
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Illumina methylationEPIC demo data in IDAT format?
illumina methylation idat epic methylationepic written 2.3 years ago by Ellen O0 • updated 2.3 years ago by Guido Hooiveld2.5k
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difference in detection p-values from Minfi vs. GenomeStudio
minfi methylation genomestudio written 2.3 years ago by brhead20 • updated 2.3 years ago by James W. MacDonald50k
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DMRcate results file ordered by genomic location and not Stouffer p-val?
methylation dmrcate written 2.2 years ago by Ellen O0 • updated 2.2 years ago by Tim Peters80
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