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1
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1
answer
41
views
1
answer
arrayQualityMetrics in reading HTAfeatureSet read by oligo package
microarray arrayqualitymetrics hta2.0 written 3 days ago by raghavee.venkatramanan • 0 • updated 3 hours ago by Mike Smith • 3.1k
1
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1
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57
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1
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Two microarrays merging (different experiments) - Error with esets (inSilicoMerging package)
microarray insilicomerging affymetrix microarrays written 4 days ago by Adam_M • 0 • updated 3 days ago by James W. MacDonald ♦ 48k
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1
answer
56
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1
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minfi R package for methylation analysis of infinium 450K microarray data
microarray bioconductor written 3 days ago by sinha.puja • 0 • updated 3 days ago by James W. MacDonald ♦ 48k
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votes
1
answer
48
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1
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Timeout was reached error in GEOquery package
microarray software error R written 17 days ago by morteza.hadizade • 10 • updated 17 days ago by Kevin Blighe • 30
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0
answers
34
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0
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Filtering probesets for HuEx ST1.0 after probeset normalization
microarray exons probefiltering written 4 weeks ago by GENOMIC_region • 0
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0
answers
64
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Exploring upstream regulators (transcription factors, drugs, etc) of transcripts in R
microarray bioconductor mapfromtranscripts cytoscape written 7 weeks ago by lm795 • 0
0
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2
answers
170
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2
answers
Limma Volcano Plot Highlight Top Genes by Color
microarray limma volcanoplot color written 8 weeks ago by dmm204 • 0 • updated 8 weeks ago by Gordon Smyth ♦ 35k
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1
answer
99
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1
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Need Guidance Regarding the Results of Microarray Pipeline
microarray maendtoend written 9 weeks ago by salmatariq080 • 0 • updated 9 weeks ago by Gordon Smyth ♦ 35k
2
votes
1
answer
182
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1
answer
extracting the genes associated with the groups or samples in pheatmap.
microarray R written 10 weeks ago by morteza.hadizade • 10 • updated 10 weeks ago by Malcolm Cook • 1.5k
3
votes
1
answer
139
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1
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difference between pd.hugene.2.1.st and hugene21sttranscriptcluster.db
microarray annotation bioconductor pd.hugene.2.1.st hugene21sttranscriptcluster.db written 12 weeks ago by Irene • 0 • updated 12 weeks ago by James W. MacDonald ♦ 48k
1
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1
answer
96
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1
answer
What to do with microarray probes that catch multiple genes?
microarray probe statistics affymetrix microarrays written 3 months ago by ravelarvargas • 0 • updated 3 months ago by James W. MacDonald ♦ 48k
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0
answers
106
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0
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Computing se.exprs in R for an Expressionset?
microarray expressionset se.exprs written 3 months ago by payam_delfani1980 • 0
3
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1
answer
110
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1
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DE genes comparison of different treatments from microarray and RNAseq data
microarray limma edger deseq2 written 3 months ago by Bio_Ram • 0 • updated 3 months ago by James W. MacDonald ♦ 48k
3
votes
1
answer
157
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1
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Filtering Gene Symbols and Sample Description from GSE files of GEO
microarray geoquery gse bioconductor gene expression written 3 months ago by mahm • 20 • updated 3 months ago by Sean Davis ♦ 21k
1
vote
1
answer
117
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1
answer
Problem installing ChAMP package.
microarray champ methylation software error written 3 months ago by cawten • 10 • updated 3 months ago by Martin Morgan ♦♦ 22k
1
vote
1
answer
120
views
1
answer
Filtering the expression values of a gene from GEO
microarray geo written 3 months ago by mahm • 20 • updated 3 months ago by James W. MacDonald ♦ 48k
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0
answers
97
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0
answers
Assessing goodness of fit of a limma model fitted to microarray data
microarray limma goodness of fit written 4 months ago by rubi • 90
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0
answers
102
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0
answers
Finding/Understanding Affy 6.0 Annotation File
snp microarray affy affymetrix written 4 months ago by CantExitVIM • 10
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votes
2
answers
114
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2
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Compare in cont.matrix part
microarray R written 4 months ago by morteza.hadizade • 10 • updated 4 months ago by Gordon Smyth ♦ 35k
1
vote
1
answer
145
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1
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remove NAs values from gset
microarray R written 4 months ago by morteza.hadizade • 10 • updated 4 months ago by James W. MacDonald ♦ 48k
3
votes
1
answer
205
views
1
answer
Design matrix for a two-color experimental design testing for time effect on 3 treated cell-lines, each with its own time=0 control
microarray twochannel limma design matrix written 4 months ago by rubi • 90 • updated 4 months ago by Gordon Smyth ♦ 35k
1
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1
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3.4k
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1
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ERROR: No residual degrees of freedom in linear model fits
microarray written 4.6 years ago by jesus urbano • 10 • updated 4 months ago by Gordon Smyth ♦ 35k
0
votes
0
answers
139
views
0
answers
Simple differential expression analysis for 2 groups
microarray limma differential gene expression agilent microarrays dea written 4 months ago by christiangriffioen • 0
2
votes
1
answer
110
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1
answer
affy() can not read MoGene2_0-st.CEL file
microarray written 4 months ago by aacharya • 0 • updated 4 months ago by James W. MacDonald ♦ 48k
0
votes
0
answers
150
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0
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Guidance to handle .CEL file in R
microarray mouse4302 R .cel fiels written 4 months ago by aacharya • 0
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