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How to merging multiple GSEs with different GPLs?
microarray probe R written 10 days ago by maryam.sabet • 0
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84
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2
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LIMMA dupcor() function time issue.
microarray limma block written 11 days ago by tleona3 • 0 • updated 10 days ago by Gordon Smyth ♦ 36k
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1
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1
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"0" p value from Rosetta resolver?
microarray affy written 14 days ago by vibhusahni • 0 • updated 14 days ago by James W. MacDonald ♦ 49k
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56
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Meta-analysis of RNAseq data
rnaseq microarray meta-analysis public data sets written 15 days ago by Vladimir Krasikov • 90 • updated 15 days ago by alexvpickering • 110
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1
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Limma design/contrast correct?
microarray limma paired design mixed model written 18 days ago by rasmus.agren • 0 • updated 18 days ago by Aaron Lun • 22k
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MCLUST: finding the best number of Gaussian components to fit my data
microarray annotation probe software error written 21 days ago by travascio.andrea91 • 0 • updated 21 days ago by Michael Love ♦ 22k
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70
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Array quality metrics for large sample size
microarray quality written 4 weeks ago by RV • 10 • updated 21 days ago by Wolfgang Huber ♦ 13k
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73
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1
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How to find the expression values of genes matched by multiple probes in 2-channel microarray?
microarray annotation written 21 days ago by KCLiv • 0 • updated 21 days ago by Gordon Smyth ♦ 36k
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2
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how can I calculate FDR with no replicate
microarray edger written 23 days ago by Bioinformatics • 30 • updated 23 days ago by Gordon Smyth ♦ 36k
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Arrayquality metrics Warning - Warning message in maximumLevels(fac, n = length(colors)):
microarray wolfgang huber written 26 days ago by RV • 10
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90
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How many probe sequences per spot
microarray written 27 days ago by Wabram • 0
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1
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72
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1
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Limma import array layout GenePix files
microarray limma layout written 28 days ago by Guillaume Robert • 0 • updated 28 days ago by Gordon Smyth ♦ 36k
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Error in Champ for Bioconductor and ChAMP.Block() analysis 450K methylation data
microarray normalization written 28 days ago by 15936296950 • 0 • updated 28 days ago by Martin Morgan ♦♦ 23k
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Taking into account strong batch effect in microarray differential expression analysis with limma
microarray limma batch effect de hugenest written 4 weeks ago by svlachavas • 640 • updated 29 days ago by Ryan C. Thompson ♦ 7.2k
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88
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Limma filtering low expressed probes
microarray limma written 4 weeks ago by Guillaume Robert • 0 • updated 4 weeks ago by Gordon Smyth ♦ 36k
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Oligo RMA normalization : ERROR; return code from pthread_create() is 22
microarray normalization oligo hta written 4 weeks ago by RV • 10
7
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117
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2
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Limma import .gpr file error
microarray limma gpr written 5 weeks ago by Guillaume Robert • 0 • updated 4 weeks ago by Gordon Smyth ♦ 36k
2
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1
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66
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aafTableAnn complaining about NAs when there are none
microarray hgu133plus2.db aaftableann annafy written 5 weeks ago by maxininfa • 0 • updated 5 weeks ago by James W. MacDonald ♦ 49k
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Creating GRanges object
microarray minfi granges methylation genomicratio written 5 weeks ago by lalchungnungabt17 • 0 • updated 5 weeks ago by James W. MacDonald ♦ 49k
3
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1
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114
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1
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Limma analysis, controlling for Donors.
microarray limma R written 5 weeks ago by reubenmcgregor88 • 0 • updated 5 weeks ago by Gordon Smyth ♦ 36k
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1
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525
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1
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Algorithm for between and within microarray normalisation (for meta-analysis).
microarray meta-analysis gene expression written 2.6 years ago by StephK • 70 • updated 5 weeks ago by Bioconductor Community ♦♦ 0
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1
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69
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1
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Meta_analysis of different platforms of microarray data
microarray cancer R software meta analysis written 6 weeks ago by Jamal • 0 • updated 6 weeks ago by James W. MacDonald ♦ 49k
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95
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WGCNA: cleaning for sample outliers
microarray wgcna gene network written 7 weeks ago by GENOMIC_region • 0 • updated 6 weeks ago by Bioconductor Community ♦♦ 0
2
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1
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122
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1
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Array Normalization on focussed array in Limma using R
microarray limma R written 6 weeks ago by reubenmcgregor88 • 0 • updated 6 weeks ago by Gordon Smyth ♦ 36k
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avereps with probes mapping to multiple genes (Agilent dual color microarray)
microarray limma agilent probe mapping avereps written 6 weeks ago by wd • 20 • updated 6 weeks ago by Gordon Smyth ♦ 36k
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