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0
votes
1
answer
39
views
1
answer
paCalls with Clariom Chips
microarray oligo clariom written 3 days ago by kmvaldez2 • 0 • updated 3 days ago by James W. MacDonald ♦ 43k
2
votes
1
answer
46
views
1
answer
Plotting Gene Expression Data From Multiple Batches
microarray plot batch effect written 12 days ago by thyagoleal • 20 • updated 12 days ago by Jenny Drnevich • 1.9k
3
votes
1
answer
53
views
1
answer
RankProd throws "is.infinite(data)" error for type "S4" for differential expression analysis
microarray affy limma rankprod bioconductor written 13 days ago by Tina Chapman • 20 • updated 13 days ago by James W. MacDonald ♦ 43k
1
vote
1
answer
309
views
1
answer
How to get genes corresponding to a GO term from topGOData object?
microarray topgo gene ontology R written 16 months ago by rishi.dasroy • 10 • updated 18 days ago by mt1022 • 0
0
votes
0
answers
61
views
0
answers
Jackknifing/bootstrapping input and output question
microarray R bootstrap jackknifing written 21 days ago by bhgyu • 0
0
votes
1
answer
69
views
1
answer
Annotation of Probe id to Gene
microarray arabidopsis thaliana annotate bioconductor written 24 days ago by rkp • 0 • updated 24 days ago by James W. MacDonald ♦ 43k
0
votes
1
answer
66
views
1
answer
How to know which Microarray Technique was used to processes the files
microarray R affymetrix microarrays written 26 days ago by ghiwa.khalil • 0 • updated 26 days ago by Axel Klenk • 790
6
votes
4
answers
116
views
4
answers
Identification of DEGs through limma analysis
microarray limma p values lfc degs written 4 weeks ago by rkp • 0
0
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0
answers
49
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0
answers
Analyzing "Hitachi human oligo chip-drug responsive genes" platform data
microarray analysis written 5 weeks ago by arisarkar88 • 0
2
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2
answers
85
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2
answers
Affymetrix miRNA4.1 / oligo package / pd.mirna.4.1
mirna microarray pdinfobuilder oligo package pd.mirna written 6 weeks ago by rolan.zauner • 0
0
votes
1
answer
67
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1
answer
How to extract DEG using limma at threshold value p<0.05 and fold change >1.5 ?
microarray limma R bioconductor written 5 weeks ago by rkp • 0 • updated 5 weeks ago by Aaron Lun • 15k
0
votes
1
answer
74
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1
answer
can't install GEOquery
microarray written 5 weeks ago by hsiaowang • 0 • updated 5 weeks ago by Martin Morgan ♦♦ 20k
2
votes
1
answer
111
views
1
answer
Limma Model Design
microarray limma methylation written 7 weeks ago by Sarah Nesbitt • 0 • updated 7 weeks ago by Aaron Lun • 15k
1
vote
1
answer
128
views
1
answer
Nonspecific filtering of microarray data
microarray filtering pre-filtering affymetrix microarrays nonspecific filtering written 7 weeks ago by n.lu • 0 • updated 7 weeks ago by Wolfgang Huber ♦ 13k
2
votes
1
answer
91
views
1
answer
around 2000 Affy probe set IDs cannot be mapped with Ensembl IDs by BiomaRt
microarray annotation hgu133a biomart written 8 weeks ago by haowang0806 • 0 • updated 7 weeks ago by James W. MacDonald ♦ 43k
2
votes
1
answer
108
views
1
answer
Limma toptable interpretation check
microarray limma fdr results p-value written 7 weeks ago by bhgyu • 0 • updated 7 weeks ago by Aaron Lun • 15k
0
votes
1
answer
76
views
1
answer
How to normalize mouse gene 1.0st arry using frma?
microarray frma written 8 weeks ago by aritra • 0 • updated 8 weeks ago by Matthew McCall • 760
0
votes
0
answers
83
views
0
answers
queries reg hub genes
microarray annotation normalization limma written 8 weeks ago by krithi11987 • 0
1
vote
1
answer
97
views
1
answer
Outliers - to remove or to not remove that is the question
microarray rna outliers written 8 weeks ago by bhgyu • 0 • updated 8 weeks ago by chris86 • 290
4
votes
2
answers
168
views
2
answers
Alternative packages to limma for analysis of microarray datasets
microarray limma deg written 9 weeks ago by Maximilian • 10 • updated 9 weeks ago by Bernd Klaus • 430
0
votes
1
answer
119
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1
answer
Help with diff. expression analysis of Agilent files
microarray R agilent differential gene expression written 9 weeks ago by bhgyu • 0 • updated 9 weeks ago by Axel Klenk • 790
0
votes
1
answer
106
views
1
answer
Contrast matrix with 2 columns
microarray limma written 10 weeks ago by judesongerbier • 0 • updated 10 weeks ago by Aaron Lun • 15k
0
votes
0
answers
133
views
0
answers
Possible confounding of variable of interest with batch covariate and Partial NA coefficients when including batch in limma linear model for microarray data
microarray limma batch effect design matrix confounding written 11 weeks ago by svlachavas • 540
1
vote
2
answers
182
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2
answers
microarray analysis code
microarray written 12 weeks ago by nia • 0
0
votes
2
answers
143
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2
answers
annotation in microarray analysis
microarray written 12 weeks ago by farahqureshi5 • 0
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