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How to regress phenotype ~ gene + covars in limma?
microarray limma R gene expression written 6 days ago by anon20955 • 0 • updated 6 days ago by Gordon Smyth ♦ 37k
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How do I creat an expressionset if there is no GDS listed on the GEO database?
microarray limma geoquery written 6 days ago by pgurkirat • 0 • updated 6 days ago by James W. MacDonald ♦ 49k
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Limma - decideTests - separate/nestedF questions
microarray limma written 12.1 years ago by Gordon Smyth ♦ 37k
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Clusterprofiler error, No gene can be mapped
microarray clusterprofiler written 21 days ago by rm1238 • 0
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Co expression analysis of rice affymetrix data
microarray coexpression analysis written 24 days ago by pratikshasharma47 • 0
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usage of topGO after limma
microarray limma topgo written 25 days ago by I.V. Lynn • 0 • updated 25 days ago by Gordon Smyth ♦ 37k
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HOW TO USE LIMMA PACKAGE
microarray limma written 28 days ago by singhjay • 10 • updated 26 days ago by Aaron Lun • 23k
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differential expression analysis of rice
microarray affymetrix differential expression analysis gpl2025 written 27 days ago by pratikshasharma47 • 0 • updated 26 days ago by Aaron Lun • 23k
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Differentially expressed genes in rice affymetrix data and annotation
microarray annotation affy limma differentially expresed genes written 26 days ago by pratikshasharma47 • 0 • updated 26 days ago by James W. MacDonald ♦ 49k
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Applying NetAffx biological annotation to Affymetrix gene expression dataset
microarray annotation written 26 days ago by lm795 • 0 • updated 26 days ago by James W. MacDonald ♦ 49k
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fData slot in gene expression analysis
microarray affy gene expression analysis written 27 days ago by pratikshasharma47 • 0
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differential expression analysis of merged dataset
microarray written 28 days ago by pratikshasharma47 • 0 • updated 28 days ago by James W. MacDonald ♦ 49k
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AnnotationData Packages for GPL2507 Sentrix Human-6 Expression BeadChip
microarray annotation written 4 weeks ago by kankejia0703 • 0 • updated 4 weeks ago by James W. MacDonald ♦ 49k
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error after normalizing data
microarray written 5 weeks ago by vasukiperumalla • 0 • updated 5 weeks ago by James W. MacDonald ♦ 49k
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Beta values and M values cluster differently
microarray epigenetics minfi epic methylationepic written 5 weeks ago by rmf • 10
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Best normalisation method
microarray epigenetics minfi epic methylationepic written 5 weeks ago by rmf • 10
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Illumina Methylation 27k minfi
microarray minfi methylation illumina27k written 7 weeks ago by laurenz.holcik • 0 • updated 6 weeks ago by Kasper Daniel Hansen ♦ 6.4k
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I am trying to recreate results from an Alzheimer's paper but I can't figure out my linear regression model
microarray limma edger differential gene expression linear regression written 7 weeks ago by ravelarvargas • 0
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~50% significant genes from RNA (NanoString) Differential Expression Analysis
microarray limma voom written 7 weeks ago by rueben.bautista7 • 0
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How to convert a SingleCellExperiment into an ExpressionSet object?
microarray annotation written 7 weeks ago by FB • 0 • updated 7 weeks ago by James W. MacDonald ♦ 49k
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Error while running affylmGUI
microarray affy limma affylmgui written 8 weeks ago by devyani66 • 0 • updated 8 weeks ago by Gordon Smyth ♦ 37k
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I am having trouble recreating the linear regression results published in an Alzheimer's paper
microarray limma edger differential gene expression linear regression written 8 weeks ago by ravelarvargas • 0
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Meta_analysis of microarray data
microarray platform meta analysis microarray data written 8 weeks ago by Jamal • 0 • updated 8 weeks ago by James W. MacDonald ♦ 49k
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When to Correct for Cell Type Heterogeneity in ChAMP Pipeline
microarray written 8 weeks ago by Gurkenkönig • 0
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ChAMP champ.norm BMIQ produces differing results
microarray normalization written 8 weeks ago by Gurkenkönig • 0
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