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0
votes
1
answer
47
views
1
answer
Outliers - to remove or to not remove that is the question
microarray rna outliers written 1 day ago by annecomplete • 0 • updated 21 hours ago by chris86 • 260
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0
answers
39
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0
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How to normalize mouse gene 1.0st arry using frma?
microarray frma written 1 day ago by aritra • 0
4
votes
2
answers
109
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2
answers
Alternative packages to limma for analysis of microarray datasets
microarray limma deg written 7 days ago by Maximilian • 10 • updated 3 days ago by Bernd Klaus • 430
0
votes
1
answer
82
views
1
answer
Help with diff. expression analysis of Agilent files
microarray R agilent differential gene expression written 9 days ago by annecomplete • 0 • updated 8 days ago by Axel Klenk • 770
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votes
1
answer
76
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1
answer
Contrast matrix with 2 columns
microarray limma written 16 days ago by judesongerbier • 0 • updated 16 days ago by Aaron Lun • 14k
0
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0
answers
94
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0
answers
Possible confounding of variable of interest with batch covariate and Partial NA coefficients when including batch in limma linear model for microarray data
microarray limma batch effect design matrix confounding written 21 days ago by svlachavas • 530
1
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2
answers
136
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2
answers
microarray analysis code
microarray written 28 days ago by nia • 0
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2
answers
100
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2
answers
annotation in microarray analysis
microarray written 27 days ago by farahqureshi5 • 0
3
votes
1
answer
92
views
1
answer
Filtering absent transcripts from Gene ST array
microarray oligo gene st pacalls written 27 days ago by Sophie Marion de Proce • 0 • updated 27 days ago by James W. MacDonald ♦ 43k
0
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1
answer
97
views
1
answer
Up and down regulation in LIMMA for microarray dataset
microarray limma differential gene expression written 4 weeks ago by danielle.newby • 0 • updated 4 weeks ago by Aaron Lun • 14k
0
votes
1
answer
123
views
1
answer
arrayExpress differential gene express analysis
microarray limma edger deseq2 bioconductor written 5 weeks ago by jadepinket • 0 • updated 5 weeks ago by Aaron Lun • 14k
0
votes
1
answer
91
views
1
answer
GEOquery http:// url error
microarray geoquery error geo getgeo written 6 weeks ago by jblack29 • 0 • updated 6 weeks ago by SamGG • 50
0
votes
1
answer
93
views
1
answer
How do I set up the design when I have multiple regions and duplicate timepoints?
microarray affy limma written 6 weeks ago by tjest • 0 • updated 6 weeks ago by Aaron Lun • 14k
1
vote
1
answer
130
views
1
answer
Retriving Annotation for HTA2.0 using biomRt
microarray annotation biomart R written 7 weeks ago by Seymoo • 0 • updated 7 weeks ago by Thomas Maurel • 680
2
votes
2
answers
138
views
2
answers
unusal expression level values after normalization in Affymetrix microarray experiment
microarray normalization hgu133a affy gcrma written 7 weeks ago by Amos Kirilovsky • 50 • updated 7 weeks ago by Gordon Smyth ♦ 30k
5
votes
2
answers
158
views
2
answers
Limma: Paired samples, multiple groups: problems understanding contrasts and model.matrix
microarray limma design and contrast matrix written 7 weeks ago by Anna • 20
0
votes
0
answers
89
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0
answers
mulcom Error in input files
microarray error differential gene expression mulcom written 8 weeks ago by arronar • 0
1
vote
1
answer
117
views
1
answer
Python Module from Kim and Volsky (2005) PAGE: Parametric Analysis of Gene Set Enrichment paper?
microarray pathway analysis differential gene expression gsea page written 8 weeks ago by danielle.newby • 0 • updated 8 weeks ago by Guido Hooiveld • 2.0k
2
votes
1
answer
146
views
1
answer
Differential Expression Analysis
microarray lumi illumina differential gene expression written 10 weeks ago by paul.elliot1994 • 0 • updated 10 weeks ago by James W. MacDonald ♦ 43k
0
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0
answers
216
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0
answers
WGCNA error in network construction ?
rnaseq microarray written 10 weeks ago by m.azhar • 0
5
votes
2
answers
213
views
2
answers
avereps(): 'ProbeName' or 'SystematicName' for agilent one-channel microarray?
microarray limma written 10 weeks ago by kevin.m.hao • 10 • updated 10 weeks ago by Gordon Smyth ♦ 30k
5
votes
4
answers
243
views
4
answers
LIMMA paired analysis adjusting for two continuous variables - microarray data
microarray limma limma design matrix limma paired analysis written 10 weeks ago by danielle.newby • 0
1
vote
1
answer
225
views
1
answer
Normalization of Illumina Microarray Data
microarray normalization illumina written 10 weeks ago by paul.elliot1994 • 0 • updated 10 weeks ago by Gordon Smyth ♦ 30k
1
vote
2
answers
463
views
2
answers
how to perform pre ranked GSEA in R?
microarray statistics R gsea written 2.2 years ago by Nemo • 60 • updated 10 weeks ago by predeus • 0
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votes
0
answers
86
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0
answers
How to pathway analysis of Arabidopsis thaliana organism
microarray pathview written 11 weeks ago by avinash gupta • 130
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