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0
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0
answers
1
views
0
answers
Absence of significant gene in DEG list
microarray limma written just now by nia • 10
2
votes
1
answer
109
views
1
answer
Design/contrast matrix for Multivariate experimental design in limma
microarray limma design and contrast matrix written 8 days ago by 1234anjalianjali1234 • 0 • updated 8 days ago by Gordon Smyth ♦ 33k
3
votes
1
answer
104
views
1
answer
How to find the degree of freedom, effect size and the variance of effect size for each contrast
microarray limma written 6 weeks ago by zicheng.hu • 20 • updated 14 days ago by williamgeorge51547 • 0
1
vote
1
answer
51
views
1
answer
affymetrix miRNA microarray analysis, (package mirna30cdf)
microarray affy written 18 days ago by english.server • 0 • updated 17 days ago by James W. MacDonald ♦ 46k
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0
answers
33
views
0
answers
Add samples labels with ConsensusClusterPlus
microarray clustering consensusclusterplus written 21 days ago by aagata.szymanek • 0
0
votes
1
answer
63
views
1
answer
Can't Use "getGEO" Command Function in R Program
microarray affy software error R bioconductor written 25 days ago by drobinson289 • 0 • updated 25 days ago by James W. MacDonald ♦ 46k
0
votes
0
answers
48
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0
answers
Probe annotations for ABI Human Genome Survey V2 microarray using Oracle
microarray annotation probe abi human genome survey v2 oracle written 5 weeks ago by judemtaylor • 0
1
vote
0
answers
98
views
0
answers
Upregulation and Downregulation of Gene Ontology terms
microarray go differential gene expression david written 5 weeks ago by seendey16 • 0
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0
answers
56
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0
answers
Error in building expression set for ArrayExpress
microarray arrayexpress R bioconductor expressionset written 5 weeks ago by rfes • 0
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votes
0
answers
68
views
0
answers
plotMA is not centered around zero for logFC
microarray differential gene expression written 6 weeks ago by twentestat • 0
1
vote
0
answers
88
views
0
answers
Clustering of samples based on specific gene sets
microarray clustering gene set analysis differential gene expression written 7 weeks ago by cherlyn.t • 0
0
votes
0
answers
86
views
0
answers
Reading in .gpr files
microarray written 7 weeks ago by english.server • 0 • updated 7 weeks ago by Gordon Smyth ♦ 33k
0
votes
2
answers
235
views
2
answers
How to normalize mouse gene 1.0st arry using frma?
microarray frma written 11 months ago by aritra • 0 • updated 7 weeks ago by emacreamoinn • 0
0
votes
0
answers
162
views
0
answers
Sub clustering from hierarchical cluster used to make heat map of gene expression data
microarray deg heatmap.2 hierarchical clustering rna seq written 9 weeks ago by lawarde.ankita1 • 20
1
vote
1
answer
148
views
1
answer
Fold Change and LogFC
microarray limma written 9 weeks ago by rkp • 0 • updated 9 weeks ago by James W. MacDonald ♦ 46k
0
votes
2
answers
791
views
2
answers
File format for single channel analysis of Agilent microarray data with Limma?
microarray written 5.9 years ago by Guest User • 12k • updated 10 weeks ago by Gordon Smyth ♦ 33k
7
votes
5
answers
251
views
5
answers
Microarray analysis using RMA method using affy, limma
microarray annotation affy aureus written 12 weeks ago by neranjan007 • 0
0
votes
1
answer
112
views
1
answer
Analysing microarray raw data: GSEXXXX_non-normalized.txt
microarray lumi gse written 11 weeks ago by mkd12 • 0 • updated 11 weeks ago by Gordon Smyth ♦ 33k
1
vote
0
answers
204
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0
answers
Removing batch effects from microarray data based on only a subset of samples
microarray limma combat removebatcheffect() written 12 weeks ago by jaro.slamecka • 100
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votes
0
answers
114
views
0
answers
ExpressionSet annotation with custom annotation file
microarray annotation R written 12 weeks ago by genesignature • 0
1
vote
2
answers
447
views
2
answers
GEOquery http:// url error
microarray geoquery error geo getgeo written 12 months ago by jblack29 • 0 • updated 3 months ago by Sean Davis ♦ 21k
0
votes
1
answer
102
views
1
answer
Unknown gene names in pd.clariom.d.human annotation package
microarray pd.clariom.d.human written 3 months ago by ahnje770 • 0 • updated 3 months ago by James W. MacDonald ♦ 46k
0
votes
1
answer
145
views
1
answer
RUVnormalize- How to output a corrected expression matrix without negative values to use for DEG analysis(i.e. limma) ?
microarray limma ruvnormalize corrected expression matrix written 3 months ago by massimo.acquaviva.78 • 0 • updated 3 months ago by Dario Strbenac • 1.4k
1
vote
1
answer
136
views
1
answer
Different microarrays annotations provided by toTable and annotateEset functions
microarray annotation affycoretools annotationtools annotationdbi written 3 months ago by eleonoregravier • 40 • updated 3 months ago by James W. MacDonald ♦ 46k
0
votes
0
answers
104
views
0
answers
Two questions about pathifier package
microarray pathways statistics written 3 months ago by arronar • 0
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