Showing: multiple comparisons • reset
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3x2 comparisons in DEseq - time (3 time points) and two treatments
deseq deseq2 rna-seq multiple comparisons written 12 months ago by rbronste • 60 • updated 12 months ago by Michael Love ♦ 24k
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edgeR multifactorial analysis implementation with RNA-Seq data
edger differential gene expression multiple comparisons multifactorial design written 16 months ago by svlachavas • 660 • updated 16 months ago by Aaron Lun • 24k
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Multiple test corrections for planed contrasts
deseq2 contrast multiple comparisons written 19 months ago by serpalma.v • 40 • updated 19 months ago by James W. MacDonald ♦ 50k
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Different padj value after multiple testing
deseq2 differential gene expression padj multiple comparisons written 2.3 years ago by tarun2 • 0 • updated 2.3 years ago by Michael Love ♦ 24k
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Similar to Tukey Post hoc after ANOVA
rnaseq deseq2 multiple comparisons post hoc written 3.1 years ago by laianavarromartin • 10
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multiple comparison using limma
limma design matrix multiple comparisons makecontrasts written 2.5 years ago by annabelle.congras • 10
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Q value obtained from QValue package is lower than P value?
qvalue R multiple comparisons pvalue written 2.5 years ago by tombernardryan • 30 • updated 2.5 years ago by Storey, John D. • 60
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edgeR: experiments with multiple factors comparisons
limma multiple factor design multiple comparisons written 2.8 years ago by xluong • 0 • updated 2.8 years ago by Gordon Smyth ♦ 37k
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"U" shaped p values distribution in DESeq2 RNA-seq DE analysis using the contrast argument
rnaseq deseq2 contrast multiple comparisons fdrtool written 3.2 years ago by sebastiano.curreli • 0
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is it possible to create this comparison?
rnaseq deseq2 multiple comparisons pairwise written 3.4 years ago by hamaor • 0 • updated 3.4 years ago by Michael Love ♦ 24k
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Correct construction of design matrix in limma for multiple contrasts for gene expression profiling
limma illumina differential gene expression design matrix multiple comparisons written 4.1 years ago by svlachavas • 660
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EdgeR Multifactorial design with batch effect-trouble with defining contrasts
edger design and contrast matrix multiple factor design multiple comparisons written 4.1 years ago by mouchkam • 20 • updated 4.1 years ago by James W. MacDonald ♦ 50k
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setup condition table in deseq2 for experiment with multiple conditions
deseq2 multiple comparisons written 4.1 years ago by annalisa.giampetruzzi • 0
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Multiple Comparisons EdgeR
edger anova glm multiple comparisons written 4.1 years ago by chickenchamp4 • 10 • updated 4.1 years ago by Ryan C. Thompson ♦ 7.3k
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