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News:
List of Deprecated Packages for Bioc3.18
Deprecation
devel
Bioconductor
Devel
2.6 years ago • updated 21 months ago
shepherl
4.3k
0
votes
11
replies
2.8k
views
News:
List of Deprecated Packages for Bioc3.19
Release
Devel
ExperimentData
Software
22 months ago • updated 15 months ago
shepherl
4.3k
1
vote
8
replies
2.2k
views
News:
Final List of Deprecated Package Bioc 3.9
deprecation
release
software
experimentData
News
written 6.8 years ago by
shepherl
4.3k
0
votes
3
replies
1.7k
views
News:
Final List of Deprecated Packages for Bioc3.11
software
annotation
experiment data
deprecated
News
updated 5.7 years ago by
kayla.interdonato
▴ 160 • written 5.8 years ago by
shepherl
4.3k
7
votes
4
replies
2.1k
views
News:
Bioconductor 3.7 is released
bioconductor
release
News
written 7.7 years ago by
Valerie Obenchain
★ 6.8k
1
vote
3
replies
1.8k
views
News:
European Bioconductor meeting 2019, 9 - 10 December in Brussels, Belgium
conference
EuroBioc
News
6.3 years ago • updated 6.2 years ago
Laurent Gatto
1.6k
0
votes
5
replies
2.1k
views
News:
Final List of Deprecated Packages for Bioc3.14
ExperimentData
Deprecation
Software
Release
Workflow
4.3 years ago • updated 3.7 years ago
shepherl
4.3k
4
votes
9
replies
4.0k
views
News:
Ensembl release 84 is out!
ensembl
mart
release84
biomart
ensembl release
News
updated 9.7 years ago by
arielpaulson
▴ 20 • written 9.9 years ago by
Thomas Maurel
▴ 800
9
votes
4
replies
3.6k
views
News:
Experimental data package 'seqc'
seqc
rsubread
featurecounts
subjunc
ercc
News
11.2 years ago
Wei Shi
★ 3.6k
1
vote
2
replies
338
views
News:
Important: Bioconductor Release 3.22 Delayed
release
written 11 weeks ago by
shepherl
4.3k
0
votes
13
replies
3.5k
views
News:
European Bioconductor Conference 2023 planning
Europe
Conference
EuroBioC
Events
News
written 3.2 years ago by
Maria Doyle
▴ 110
0
votes
7
replies
2.2k
views
News:
EuroBioC2023 abstract submission is open!
presentation
EuroBioC2023
Conference
community
Bioconductor
written 2.9 years ago by
Maria Doyle
▴ 110
1
vote
2
replies
2.3k
views
News:
Registrations are now open for BioC Asia 2022
Asia
BioCAsia
Conferences
Events
News
3.3 years ago • updated 3.2 years ago
Peter Hickey
▴ 760
7
votes
5
replies
3.7k
views
News:
European Bioconductor Developers Meeting: Cambridge 7/8th December 2015
developers
conference
workshop
News
updated 10.2 years ago by
Laurent Gatto
1.6k • written 10.4 years ago by
Mark Dunning
★ 1.1k
0
votes
2
replies
2.6k
views
News:
Final List of Deprecated Packages for Bioc3.10
annotation
experimentdata
deprecation
release
software
News
6.3 years ago • updated 6.2 years ago
shepherl
4.3k
2
votes
2
replies
2.1k
views
News:
Final List of Deprecated Packages for Bioc3.13
Workflow
Software
ExperimentData
Deprecation
5.1 years ago • updated 4.7 years ago
shepherl
4.3k
0
votes
2
replies
2.1k
views
News:
ChIPpeakAnno::getAnnotation get Exons
chippeakanno
News
updated 10.8 years ago by
Ou, Jianhong
★ 1.3k • written 10.8 years ago by
Julie Zhu
★ 4.3k
1
vote
2
replies
1.9k
views
News:
Final List of Deprecated Packages for Bioc3.12
annotation
software
experimentdata
deprecated
News
5.3 years ago • updated 5.2 years ago
shepherl
4.3k
0
votes
2
replies
1.7k
views
News:
Single Package Builder / New Package Submission
new submission
build report
packages
News
8.2 years ago
shepherl
4.3k
6
votes
6
replies
4.5k
views
News:
Bioconductor Git/GitHub Mirrors
git
github
git-svn bridge
subversion
News
updated 10.6 years ago by
Guangchuang Yu
★ 1.2k • written 10.6 years ago by
Dan Tenenbaum
★ 8.2k
0
votes
2
replies
1.4k
views
News:
List of Deprecated Packages for Bioc3.7
deprecate
News
updated 8.1 years ago by
flipdiving2017
• 0 • written 8.2 years ago by
shepherl
4.3k
9
votes
8
replies
7.6k
views
News:
new package `ggtree` in devel branch
ggtree
phylogenetic
News
updated 10.9 years ago by
remi.tournebize
▴ 10 • written 11.0 years ago by
Guangchuang Yu
★ 1.2k
4
votes
11
replies
2.3k
views
News:
Bioconductor 3.8 is released
bioconductor
news
release
News
updated 7.1 years ago by
restat110
• 0 • written 7.2 years ago by
Valerie Obenchain
★ 6.8k
0
votes
2
replies
1.6k
views
News:
List of Deprecated Packages for Bioc3.17
Bioconductor
Deprecation
Devel
devel
2.8 years ago • updated 2.6 years ago
shepherl
4.3k
5
votes
5
replies
2.9k
views
News:
Ensembl 88 is out!
ensembl
ensembl mart
biomart
e!88
News
8.8 years ago
Thomas Maurel
▴ 800
20
votes
13
replies
4.6k
views
News:
markdown is coming to the support site
markdown
News
8.5 years ago • updated 7.9 years ago
Lucas Schiffer
▴ 240
0
votes
1
reply
1.6k
views
News:
Exploiting computational immunology to understand the immune system| Symposium
computational biology
immunology
bioinformatics
symposium
RIMLS
News
updated 9.0 years ago by
Maxim.Baranov
• 0 • written 9.1 years ago by
maximbaranov23
• 0
4
votes
1
reply
2.2k
views
News:
Advanced R programming course - EMBL Heidelberg, 3-4 April 2017
course
workshop
News
9.0 years ago • updated 8.8 years ago
Laurent Gatto
1.6k
0
votes
1
reply
1.6k
views
News:
List of Deprecated Packages for Bioc3.6
deprecate
News
8.4 years ago • updated 8.3 years ago
shepherl
4.3k
0
votes
1
reply
1.5k
views
News:
List of Deprecated Packages Bioc 3.10
annotation
experimentdata
software
deprecation
release
News
6.5 years ago • updated 6.4 years ago
shepherl
4.3k
1
vote
1
reply
1.8k
views
News:
SBGNview: Data Analysis, Integration and Visualization on 5000+ Pathways/3000+ Species
SBGNview
pathways
SBGNview.data
pathview
visualization
4.9 years ago
Luo Weijun
★ 1.6k
0
votes
2
replies
1.7k
views
News:
Final List of Deprecated Packages for Bioc3.7
deprecate
package
release
News
written 7.8 years ago by
shepherl
4.3k
5
votes
2
replies
3.7k
views
News:
Ensembl release 81 is out!
human
mouse
GRCh38
biomart
Ensembl
News
updated 10.5 years ago by
Sonali Arora
▴ 390 • written 10.5 years ago by
Thomas Maurel
▴ 800
5
votes
1
reply
4.1k
views
News:
Bioconductor-related papers -- special F1000Research collection for Bioc2016
publication
workflows
benchmark
teaching
News
updated 9.8 years ago by
thomas.ingraham
▴ 10 • written 9.8 years ago by
Wolfgang Huber
★ 13k
0
votes
1
reply
2.1k
views
News:
Plotly uprading issue in ChAMP package
ChAMP
Epigenetics
plotly
Shiny
GUI
News
9.2 years ago • updated 9.0 years ago
Yuan Tian
▴ 90
0
votes
1
reply
1.6k
views
News:
New Package and New Docker Image Submission Deadline for Bioc Release 3.11
release
package submission
docker
deadline
News
5.8 years ago
shepherl
4.3k
0
votes
1
reply
2.6k
views
News:
Bug in ChAMP package champ.SVD() function
champ
methylation
450k
SVD
EPIC
News
9.4 years ago
Yuan Tian
▴ 90
0
votes
1
reply
1.8k
views
News:
OrgDbs in AnnotationHub
annotationhub
orgdb
News
8.2 years ago
shepherl
4.3k
0
votes
1
reply
1.8k
views
News:
Bioconductor 3.19 Release Schedule
Release
release
Software
22 months ago • updated 21 months ago
shepherl
4.3k
1
vote
2
replies
1.4k
views
News:
Ensembl 108 has been released!
biomaRt
ensembldb
ensembl
written 3.2 years ago by
Louisse
▴ 10
0
votes
1
reply
311
views
News:
Announcing a New Journal - Bioinformatics Methods and Applications - Now Open for Submissions
Bioconductor
written 6 months ago by
Wei Shi
★ 3.6k
10
votes
15
replies
3.7k
views
News:
BioC 2017: Where Software and Biology Connect, 26 / 27 - 28 July, Boston, MA
conference
bioc2017
News
8.8 years ago • updated 8.5 years ago
Martin Morgan
25k
3
votes
4
replies
3.1k
views
News:
Bioconductor 3.20 Release Schedule
software
release
Release
updated 8 months ago by
randyprice13102000
• 0 • written 16 months ago by
shepherl
4.3k
13
votes
3
replies
3.3k
views
News:
Bioconductor teaching week
teaching
Carpentries
written 3.4 years ago by
Laurent Gatto
1.6k
1
vote
3
replies
1.9k
views
News:
Initial List of Deprecated Package Bioc 3.9
package
deprecate
release
News
updated 7.2 years ago by
Wolfgang Huber
★ 13k • written 7.2 years ago by
shepherl
4.3k
0
votes
1
reply
1.1k
views
News:
Bioconductor Scientific or Informatic Technology Advancement Award!
Recognition
Awards
Bioc2022
Bioconductor
written 3.7 years ago by
shepherl
4.3k
0
votes
2
replies
1.9k
views
News:
Looking to attend to a Bioconductor course for biologists in Europe
course
News
updated 10.7 years ago by
andrew.j.skelton73
▴ 370 • written 10.7 years ago by
laianavarromartin
▴ 20
5
votes
2
replies
1.8k
views
News:
BioC2019 talk/workshop/scholarship submission deadline MARCH 15
BioC2019
News
updated 6.9 years ago by
Julie Zhu
★ 4.3k • written 6.9 years ago by
Levi Waldron
★ 1.1k
0
votes
1
reply
440
views
News:
GSEA in R/Bioconductor course
GSEABenchmarkeR
pairedGSEA
GeneSetEnrichment
written 10 months ago by
info
▴ 10
0
votes
1
reply
807
views
News:
Stop mirror service
metaMSdata
updated 19 months ago by
shepherl
4.3k • written 19 months ago by
khonda
• 0
555 results • Page
1 of 12
Recent ...
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Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry
by
JKim
• 0
Hi Emily, He left some comments regarding normalization. Here is the relevant quote: > The EList object produced by dpcQuant(), containi…
Comment: Joining different datasets and analyzing using the group-specific condition effe
by
James W. MacDonald
68k
Yes, making a group factor simplifies things, and you will need a new column for disease subject to avoid having a design that is not full …
Comment: Question about the filterByExpr function inputs in edgeR
by
mohammedtoufiq91
▴ 10
@gordonsmyth Yes, Gender is more a nuisance factor in our experiment, and our primary interest is to compare groups. I will just use filter…
Comment: Joining different datasets and analyzing using the group-specific condition effe
by
jason.chai
• 0
Thank you very much. I had read that and wondered if I used the recommendation in DESeq vignette, I would lose the pairing between groups? …
Comment: Questions about bacon QC and correction on EWAS results
by
sup0903
• 0
This is qq plot and histogram generated before bacon correction ![enter image description here][1] ![enter image description here][2] …
Votes
Answer: Question about the filterByExpr function inputs in edgeR
A: DESeq2: What is the unit of DESeq2 normalized read count (VST)? Is it tag per mi
Answer: Clarification on counting in Rsubread (featureCounts)
Comment: Clarification on counting in Rsubread (featureCounts)
C: ControlGenes/ housekeeping genes Deseq2
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