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News:
List of Deprecated Packages for Bioc3.18
Deprecation
devel
Bioconductor
Devel
9 months ago • updated 1 day ago
shepherl
3.8k
10
votes
15
replies
2.8k
views
News:
BioC 2017: Where Software and Biology Connect, 26 / 27 - 28 July, Boston, MA
conference
bioc2017
News
7.1 years ago • updated 6.8 years ago
Martin Morgan
25k
20
votes
13
replies
3.4k
views
News:
markdown is coming to the support site
markdown
News
6.7 years ago • updated 6.2 years ago
Lucas Schiffer
▴ 240
4
votes
11
replies
1.7k
views
News:
Bioconductor 3.8 is released
bioconductor
news
release
News
updated 5.3 years ago by
restat110
• 0 • written 5.5 years ago by
Valerie Obenchain
★ 6.8k
8
votes
10
replies
2.1k
views
News:
Bioconductor 3.2 is released!
news
News
updated 8.5 years ago by
JunLVI
▴ 40 • written 8.5 years ago by
Dan Tenenbaum
★ 8.2k
4
votes
9
replies
2.9k
views
News:
Ensembl release 84 is out!
ensembl
mart
release84
biomart
ensembl release
News
updated 8.0 years ago by
arielpaulson
▴ 20 • written 8.1 years ago by
Thomas Maurel
▴ 800
1
vote
8
replies
1.5k
views
News:
Final List of Deprecated Package Bioc 3.9
deprecation
release
software
experimentData
News
written 5.1 years ago by
shepherl
3.8k
9
votes
8
replies
6.7k
views
News:
new package `ggtree` in devel branch
ggtree
phylogenetic
News
updated 9.2 years ago by
remi.tournebize
▴ 10 • written 9.2 years ago by
Guangchuang Yu
★ 1.2k
14
votes
8
replies
2.6k
views
News:
Bioconductor packages now each have a DOI.
doi
citation
News
updated 6.6 years ago by
Martin Morgan
25k • written 6.7 years ago by
Sean Davis
21k
1
vote
7
replies
1.1k
views
News:
ensembl 94 gtfs and fasta twobits have been added to AnnotationHub
annotationdata
annotationhub
ensembl
gtf
2bit
News
5.5 years ago
shepherl
3.8k
9
votes
7
replies
3.0k
views
News:
Conference: BioC 2016: Where Software and Biology Connect, Stanford, 24-26 June
BioC2016
Conference
News
updated 7.8 years ago by
shepherl
3.8k • written 8.3 years ago by
Martin Morgan
25k
5
votes
7
replies
1.5k
views
News:
Updated support site
news
News
9.5 years ago
Martin Morgan
25k
6
votes
6
replies
3.3k
views
News:
Bioconductor Git/GitHub Mirrors
git
github
git-svn bridge
subversion
News
updated 8.8 years ago by
Guangchuang Yu
★ 1.2k • written 8.8 years ago by
Dan Tenenbaum
★ 8.2k
3
votes
6
replies
1.1k
views
News:
Bioconductor will rename the default branch on `git.bioconductor.org` to `devel`
Software
Bioconductor
Devel
devel
updated 13 months ago by
darrelvanhoy
• 0 • written 13 months ago by
shepherl
3.8k
0
votes
6
replies
543
views
News:
List of Deprecated Packages for Bioc3.19
Release
Devel
ExperimentData
Software
7 weeks ago • updated 6 days ago
shepherl
3.8k
5
votes
5
replies
2.8k
views
News:
Invitation to submit articles to the Bioconductor gateway on F1000Research
publication
News
6.1 years ago
Sean Davis
21k
0
votes
5
replies
1.3k
views
News:
Final List of Deprecated Packages for Bioc3.14
ExperimentData
Deprecation
Software
Release
Workflow
2.5 years ago • updated 24 months ago
shepherl
3.8k
5
votes
5
replies
2.0k
views
News:
Ensembl 88 is out!
ensembl
ensembl mart
biomart
e!88
News
7.1 years ago
Thomas Maurel
▴ 800
3
votes
5
replies
1.4k
views
News:
sorted the results of function dba.report in DiffBind R package
diffbind
News
updated 5.4 years ago by
Rory Stark
★ 5.1k • written 5.4 years ago by
bioqianyang
• 0
0
votes
5
replies
1.7k
views
News:
Ensembl 79 release is out!
Ensembl
biomart
release
news
News
updated 9.1 years ago by
Dan Tenenbaum
★ 8.2k • written 9.1 years ago by
amonida
▴ 20
2
votes
5
replies
3.3k
views
News:
New in DiffBind 3.2: dba.plotProfile() - Peak profiles and profile heatmaps
profileplyr
ATACSeq
DiffBind
ComplexHeatmap
ChIPSeq
updated 16 months ago by
Junsik
• 0 • written 2.9 years ago by
Rory Stark
★ 5.1k
12
votes
5
replies
1.9k
views
News:
DOI for packages
DOI
doi
packages
citation
publication
News
6.5 years ago
shepherl
3.8k
7
votes
5
replies
2.9k
views
News:
European Bioconductor Developers Meeting: Cambridge 7/8th December 2015
developers
conference
workshop
News
updated 8.5 years ago by
Laurent Gatto
1.6k • written 8.6 years ago by
Mark Dunning
★ 1.1k
0
votes
4
replies
685
views
News:
Important Bioconductor Release 3.18 deadlines this week
Release
Devel
release
devel
updated 6 months ago by
Guido Hooiveld
★ 3.9k • written 6 months ago by
shepherl
3.8k
7
votes
4
replies
1.7k
views
News:
Bioconductor 3.7 is released
bioconductor
release
News
written 6.0 years ago by
Valerie Obenchain
★ 6.8k
0
votes
4
replies
1.1k
views
News:
BridgeDb build fails due to website unavailability
bridgedbr
News
4.4 years ago • updated 4.0 years ago
egon.willighagen
▴ 10
9
votes
4
replies
2.8k
views
News:
Experimental data package 'seqc'
seqc
rsubread
featurecounts
subjunc
ercc
News
9.4 years ago
Wei Shi
★ 3.6k
0
votes
4
replies
1.1k
views
News:
List of Deprecated Packages for Bioc3.15
Devel
Deprecation
Release
Bioconductor
2.1 years ago • updated 18 months ago
shepherl
3.8k
3
votes
3
replies
1.1k
views
News:
Bioconductor code of conduct
biocon
code-of-conduct
Bioconductor
updated 3.2 years ago by
Lluís Revilla Sancho
▴ 730 • written 3.2 years ago by
Laurent Gatto
1.6k
1
vote
3
replies
1.3k
views
News:
European Bioconductor meeting 2019, 9 - 10 December in Brussels, Belgium
conference
EuroBioc
News
4.6 years ago • updated 4.5 years ago
Laurent Gatto
1.6k
0
votes
3
replies
1.0k
views
News:
List of Deprecated Packages Bioc 3.10
annotation
experimentdata
software
release
deprecation
News
4.9 years ago
shepherl
3.8k
0
votes
3
replies
1.1k
views
News:
New Package Submission Workflow Updates!
new packages
submission
bioconductor
News
updated 2.7 years ago by
jonathan.dekermanjian
• 0 • written 3.8 years ago by
shepherl
3.8k
4
votes
3
replies
893
views
News:
Bioconductor 3.9 is released
bioconductor
release
News
5.0 years ago
shepherl
3.8k
6
votes
3
replies
2.3k
views
News:
New Bioconductor package for dbSNP151
SNPlocs.Hsapiens.dbSNP151.GRCh38
BSgenome
News
5.8 years ago
Hervé Pagès
16k
2
votes
3
replies
1.3k
views
News:
List of Deprecated Packages for Bioc3.8
package
release
deprecate
News
5.7 years ago
shepherl
3.8k
10
votes
3
replies
3.0k
views
News:
Updates to BiocStyle formatting
BiocStyle
vignettes
rmarkdown
latex
News
6.7 years ago
Andrzej Oleś
▴ 750
1
vote
3
replies
1.2k
views
News:
PLEASE READ: devel packages in release channel
news
News
8.5 years ago
Dan Tenenbaum
★ 8.2k
0
votes
3
replies
995
views
News:
Final List of Deprecated Packages for Bioc3.11
software
annotation
experiment data
deprecated
News
updated 4.0 years ago by
kayla.interdonato
▴ 160 • written 4.1 years ago by
shepherl
3.8k
13
votes
3
replies
2.1k
views
News:
Bioconductor teaching week
teaching
Carpentries
written 20 months ago by
Laurent Gatto
1.6k
1
vote
3
replies
1.2k
views
News:
Initial List of Deprecated Package Bioc 3.9
package
deprecate
release
News
updated 5.5 years ago by
Wolfgang Huber
★ 13k • written 5.5 years ago by
shepherl
3.8k
1
vote
2
replies
1.4k
views
News:
Final List of Deprecated Packages for Bioc3.12
annotation
software
experimentdata
deprecated
News
3.5 years ago
shepherl
3.8k
0
votes
2
replies
1.6k
views
News:
ChIPpeakAnno::getAnnotation get Exons
chippeakanno
News
updated 9.1 years ago by
Ou, Jianhong
★ 1.3k • written 9.1 years ago by
Julie Zhu
★ 4.3k
0
votes
2
replies
1.3k
views
News:
Ensembl 103 has been released
biomaRt
ensembldb
Ensembl
ensemblVEP
Biomart
3.2 years ago • updated 3.0 years ago
mchakiachvili
▴ 20
1
vote
2
replies
630
views
News:
Win 1 of 50 free virtual registrations to BioC Asia 2022 (Dec 1-2, 2022)
Asia
BioCAsia
Conferences
Events
BioC
written 17 months ago by
Peter Hickey
▴ 740
5
votes
2
replies
1.3k
views
News:
BioC2019 talk/workshop/scholarship submission deadline MARCH 15
BioC2019
News
updated 5.1 years ago by
Julie Zhu
★ 4.3k • written 5.2 years ago by
Levi Waldron
★ 1.1k
1
vote
2
replies
1.3k
views
News:
Registrations are now open for BioC Asia 2022
Asia
BioCAsia
Conferences
Events
News
18 months ago • updated 17 months ago
Peter Hickey
▴ 740
4
votes
2
replies
1.8k
views
News:
Announcing new test coverage shields
test coverage
News
8.8 years ago
Dan Tenenbaum
★ 8.2k
2
votes
2
replies
1.5k
views
News:
Final List of Deprecated Packages for Bioc3.13
Workflow
Software
ExperimentData
Deprecation
3.4 years ago • updated 2.9 years ago
shepherl
3.8k
3
votes
2
replies
984
views
News:
Extended submission deadline for EuroBioc2020
talk
workshop
conference
eurobioc
poster
3.5 years ago
kevin.rue
▴ 350
4
votes
2
replies
1.6k
views
News:
ensembldb EnsDb databases for Ensembl release 101 added to AnnotationHub
EnsDb
ensembldb
annotation
AnnotationHub
News
3.6 years ago
Johannes Rainer
★ 2.0k
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Answer: OrgDb for maize
by
Guido Hooiveld
★ 3.9k
I notice the data you are working with is based on `ensembl` ids. This is important, because the `OrgDb` are annotation databases that are …
Comment: Theoretical WGCNA Question
by
Garrett
• 0
Thanks Peter!
Comment: FGSEA pre-ranked input in increasing order or decreasing
by
sropri
• 0
Thank you!
Comment: FGSEA pre-ranked input in increasing order or decreasing
by
alserg
▴ 240
They are reorder in the decreasing order.
Comment: significant difference of p-values with dream() after updating VariancePartition
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Le
• 0
Thanks for your reply @gabrielhoffman ! I've been trying to isolate the changes, and v1.32.5 had the same results as v1.33.1 while v1.30.0…
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Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
Comment: DEXSeq DEXSeqDataSet count matrix duplication
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