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News:
List of Deprecated Packages for Bioc3.18
Deprecation
devel
Bioconductor
Devel
2.5 years ago • updated 20 months ago
shepherl
4.2k
10
votes
15
replies
3.7k
views
News:
BioC 2017: Where Software and Biology Connect, 26 / 27 - 28 July, Boston, MA
conference
bioc2017
News
8.8 years ago • updated 8.4 years ago
Martin Morgan
25k
20
votes
13
replies
4.5k
views
News:
markdown is coming to the support site
markdown
News
8.4 years ago • updated 7.8 years ago
Lucas Schiffer
▴ 240
0
votes
13
replies
3.5k
views
News:
European Bioconductor Conference 2023 planning
Europe
Conference
EuroBioC
Events
News
written 3.1 years ago by
Maria Doyle
▴ 110
4
votes
11
replies
2.3k
views
News:
Bioconductor 3.8 is released
bioconductor
news
release
News
updated 7.0 years ago by
restat110
• 0 • written 7.1 years ago by
Valerie Obenchain
★ 6.8k
0
votes
11
replies
2.6k
views
News:
List of Deprecated Packages for Bioc3.19
Release
Devel
ExperimentData
Software
21 months ago • updated 14 months ago
shepherl
4.2k
8
votes
10
replies
2.9k
views
News:
Bioconductor 3.2 is released!
news
News
updated 10.2 years ago by
JunLVI
▴ 40 • written 10.2 years ago by
Dan Tenenbaum
★ 8.2k
4
votes
9
replies
3.9k
views
News:
Ensembl release 84 is out!
ensembl
mart
release84
biomart
ensembl release
News
updated 9.7 years ago by
arielpaulson
▴ 20 • written 9.8 years ago by
Thomas Maurel
▴ 800
1
vote
8
replies
2.1k
views
News:
Final List of Deprecated Package Bioc 3.9
deprecation
release
software
experimentData
News
written 6.7 years ago by
shepherl
4.2k
9
votes
8
replies
7.5k
views
News:
new package `ggtree` in devel branch
ggtree
phylogenetic
News
updated 10.8 years ago by
remi.tournebize
▴ 10 • written 10.9 years ago by
Guangchuang Yu
★ 1.2k
14
votes
8
replies
3.4k
views
News:
Bioconductor packages now each have a DOI.
doi
citation
News
updated 8.3 years ago by
Martin Morgan
25k • written 8.3 years ago by
Sean Davis
21k
0
votes
7
replies
2.1k
views
News:
EuroBioC2023 abstract submission is open!
presentation
EuroBioC2023
Conference
community
Bioconductor
written 2.8 years ago by
Maria Doyle
▴ 110
5
votes
7
replies
2.0k
views
News:
Updated support site
news
News
11.2 years ago
Martin Morgan
25k
1
vote
7
replies
1.5k
views
News:
ensembl 94 gtfs and fasta twobits have been added to AnnotationHub
annotationdata
annotationhub
ensembl
gtf
2bit
News
7.2 years ago
shepherl
4.2k
9
votes
7
replies
3.6k
views
News:
Conference: BioC 2016: Where Software and Biology Connect, Stanford, 24-26 June
BioC2016
Conference
News
updated 9.4 years ago by
shepherl
4.2k • written 9.9 years ago by
Martin Morgan
25k
6
votes
6
replies
4.4k
views
News:
Bioconductor Git/GitHub Mirrors
git
github
git-svn bridge
subversion
News
updated 10.5 years ago by
Guangchuang Yu
★ 1.2k • written 10.5 years ago by
Dan Tenenbaum
★ 8.2k
3
votes
6
replies
1.9k
views
News:
Bioconductor will rename the default branch on `git.bioconductor.org` to `devel`
Software
Bioconductor
Devel
devel
updated 2.7 years ago by
darrelvanhoy
• 0 • written 2.8 years ago by
shepherl
4.2k
0
votes
5
replies
2.7k
views
News:
EuroBioC2024 abstract submission is open!
Conference
Bioconductor
EuroBioC2024
written 22 months ago by
Maria Doyle
▴ 110
12
votes
5
replies
2.6k
views
News:
DOI for packages
DOI
doi
packages
citation
publication
News
8.2 years ago
shepherl
4.2k
5
votes
5
replies
2.8k
views
News:
Ensembl 88 is out!
ensembl
ensembl mart
biomart
e!88
News
8.7 years ago
Thomas Maurel
▴ 800
3
votes
5
replies
2.0k
views
News:
sorted the results of function dba.report in DiffBind R package
diffbind
News
updated 7.0 years ago by
Rory Stark
★ 5.2k • written 7.0 years ago by
bioqianyang
• 0
0
votes
5
replies
2.1k
views
News:
Final List of Deprecated Packages for Bioc3.14
ExperimentData
Deprecation
Software
Release
Workflow
4.2 years ago • updated 3.7 years ago
shepherl
4.2k
2
votes
5
replies
5.7k
views
News:
New in DiffBind 3.2: dba.plotProfile() - Peak profiles and profile heatmaps
profileplyr
ATACSeq
DiffBind
ComplexHeatmap
ChIPSeq
updated 3.0 years ago by
Junsik
• 0 • written 4.6 years ago by
Rory Stark
★ 5.2k
0
votes
5
replies
2.2k
views
News:
Ensembl 79 release is out!
Ensembl
biomart
release
news
News
updated 10.8 years ago by
Dan Tenenbaum
★ 8.2k • written 10.8 years ago by
amonida
▴ 20
7
votes
5
replies
3.6k
views
News:
European Bioconductor Developers Meeting: Cambridge 7/8th December 2015
developers
conference
workshop
News
updated 10.2 years ago by
Laurent Gatto
1.6k • written 10.3 years ago by
Mark Dunning
★ 1.1k
5
votes
5
replies
4.6k
views
News:
Invitation to submit articles to the Bioconductor gateway on F1000Research
publication
News
7.7 years ago
Sean Davis
21k
0
votes
4
replies
2.1k
views
News:
Important Bioconductor Release 3.18 deadlines this week
Release
Devel
release
devel
updated 2.2 years ago by
Guido Hooiveld
★ 4.1k • written 2.2 years ago by
shepherl
4.2k
7
votes
4
replies
2.1k
views
News:
Bioconductor 3.7 is released
bioconductor
release
News
written 7.6 years ago by
Valerie Obenchain
★ 6.8k
0
votes
4
replies
1.7k
views
News:
BridgeDb build fails due to website unavailability
bridgedbr
News
6.0 years ago • updated 5.7 years ago
egon.willighagen
▴ 10
0
votes
4
replies
2.2k
views
News:
Announcing GBCC 2025: The first-ever joint conference between Bioconductor and Galaxy!
Conference
Bioconductor
Community
updated 8 weeks ago by
dzv20413
• 0 • written 15 months ago by
Maria Doyle
▴ 110
0
votes
4
replies
1.8k
views
News:
List of Deprecated Packages for Bioc3.15
Devel
Deprecation
Release
Bioconductor
3.7 years ago • updated 3.2 years ago
shepherl
4.2k
9
votes
4
replies
3.5k
views
News:
Experimental data package 'seqc'
seqc
rsubread
featurecounts
subjunc
ercc
News
11.1 years ago
Wei Shi
★ 3.6k
3
votes
4
replies
2.8k
views
News:
Bioconductor 3.20 Release Schedule
software
release
Release
updated 7 months ago by
randyprice13102000
• 0 • written 15 months ago by
shepherl
4.2k
0
votes
4
replies
2.3k
views
News:
EuroBioC2023 abstract submission closing soon!
presentation
EuroBioc2023
Conference
community
Bioconductor
written 2.7 years ago by
Maria Doyle
▴ 110
0
votes
3
replies
1.6k
views
News:
Final List of Deprecated Packages for Bioc3.11
software
annotation
experiment data
deprecated
News
updated 5.6 years ago by
kayla.interdonato
▴ 160 • written 5.7 years ago by
shepherl
4.2k
4
votes
3
replies
1.3k
views
News:
Bioconductor 3.9 is released
bioconductor
release
News
6.6 years ago
shepherl
4.2k
1
vote
3
replies
1.6k
views
News:
PLEASE READ: devel packages in release channel
news
News
10.1 years ago
Dan Tenenbaum
★ 8.2k
1
vote
3
replies
1.4k
views
News:
Ensembl 114 / Ensembl Genomes 61 has been released!
biomaRt
ensembldb
written 7 months ago by
Aleena_Ensembl
▴ 30
2
votes
3
replies
1.9k
views
News:
List of Deprecated Packages for Bioc3.8
package
release
deprecate
News
7.4 years ago
shepherl
4.2k
13
votes
3
replies
3.2k
views
News:
Bioconductor teaching week
teaching
Carpentries
written 3.3 years ago by
Laurent Gatto
1.6k
10
votes
3
replies
3.8k
views
News:
Updates to BiocStyle formatting
BiocStyle
vignettes
rmarkdown
latex
News
8.4 years ago • updated 8.3 years ago
Andrzej Oleś
▴ 750
6
votes
3
replies
3.7k
views
News:
New Bioconductor package for dbSNP151
SNPlocs.Hsapiens.dbSNP151.GRCh38
BSgenome
News
7.5 years ago
Hervé Pagès
16k
3
votes
3
replies
1.6k
views
News:
Bioconductor code of conduct
biocon
code-of-conduct
Bioconductor
updated 4.9 years ago by
Lluís Revilla Sancho
▴ 760 • written 4.9 years ago by
Laurent Gatto
1.6k
3
votes
3
replies
1.7k
views
News:
Extended submission deadline for EuroBioc2020
talk
workshop
conference
eurobioc
poster
written 5.1 years ago by
kevin.rue
▴ 350
1
vote
3
replies
1.8k
views
News:
European Bioconductor meeting 2019, 9 - 10 December in Brussels, Belgium
conference
EuroBioc
News
6.2 years ago • updated 6.1 years ago
Laurent Gatto
1.6k
0
votes
3
replies
1.6k
views
News:
List of Deprecated Packages Bioc 3.10
annotation
experimentdata
software
release
deprecation
News
6.5 years ago
shepherl
4.2k
0
votes
3
replies
1.7k
views
News:
New Package Submission Workflow Updates!
new packages
submission
bioconductor
News
updated 4.4 years ago by
jonathan.dekermanjian
• 0 • written 5.4 years ago by
shepherl
4.2k
1
vote
3
replies
1.8k
views
News:
Initial List of Deprecated Package Bioc 3.9
package
deprecate
release
News
updated 7.1 years ago by
Wolfgang Huber
★ 13k • written 7.1 years ago by
shepherl
4.2k
0
votes
2
replies
2.0k
views
News:
Ensembl 103 has been released
biomaRt
ensembldb
Ensembl
ensemblVEP
Biomart
4.8 years ago • updated 4.6 years ago
mchakiachvili
▴ 20
1
vote
2
replies
1.9k
views
News:
Final List of Deprecated Packages for Bioc3.12
annotation
software
experimentdata
deprecated
News
5.2 years ago
shepherl
4.2k
552 results • Page
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Answer: NUPOP usage
by
shepherl
4.2k
You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…
Comment: How can I correctly use phyloseq with Docker?
by
fnfgame
• 0
In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …
Comment: DECIPHER DesignProbes unable to design FISH-probes
by
Erik Wright
▴ 150
Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment
by
Michael Love
43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment
by
Michael Love
43k
The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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