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Online RNA-seq analysis course 26-29th Janury
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3 days ago
Frances Turner
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written 11 weeks ago by
shepherl
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Maria Doyle
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• 0 • written 16 months ago by
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4 months ago
Ludwig Geistlinger
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written 2.7 years ago by
Maria Doyle
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biomaRt
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• 0 • written 22 months ago by
Maria Doyle
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• 0 • written 16 months ago by
shepherl
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9 months ago
shepherl
4.3k
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Introduction to Epigenomics data analysis with R and Bioconductor course (online) - 14th-18th April
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9 months ago
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15 months ago • updated 9 months ago
shepherl
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561
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9 months ago
shepherl
4.3k
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676
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9 months ago
shepherl
4.3k
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858
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Gene Set Enrichment Analysis in Bioconductor course
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11 months ago • updated 10 months ago
info
▴ 10
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624
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News:
EuroBioC2025: Abstract Submissions Open!
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10 months ago
Maria Doyle
▴ 110
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10
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542
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News:
GBCC2025 Abstract Submissions & Registration Now Open!
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11 months ago
Maria Doyle
▴ 110
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0
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433
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Mass Spectrometry and Proteomics with R/Bioconductor course
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11 months ago
info
▴ 10
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324
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Announcing the GBCC2025 Logo Design Winner!
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11 months ago
Maria Doyle
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659
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11 months ago
Maria Doyle
▴ 110
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564
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News:
Online course: Gene set enrichment analysis in R/Bioconductor
GSEABenchmarkeR
12 months ago
info
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747
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Join BOC Sciences at Drug Discovery Chemistry 2024
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written 22 months ago by
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written 2.2 years ago by
shepherl
4.3k
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14 months ago
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457
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14 months ago
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News:
RNAseq data analysis with Bioconductor (online course)
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15 months ago • updated 14 months ago
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Answer: When to use edgeR or limma
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I would use edgeR's quasi-likelihood model for any analysis with a smaller number of observations (like 3 vs 3 or similar), but if you have…
Answer: limpa-blank normalization and Spectronaut's PTM stoichiometry
by
Gordon Smyth
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limpa reads standard feature-level output from Spectronaut. You do not need to make any changes to the output before reading it into limpa.…
Comment: Question about the filterByExpr function inputs in edgeR
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mohammedtoufiq91
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@gordonsmyth Noted, thank you very much.
Comment: Question about the filterByExpr function inputs in edgeR
by
Gordon Smyth
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Regarding edgeR v4 filtering, I didn't mention anything about a minimum count of 10 but rather said "a positive count". So a minimalistic f…
Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry
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JKim
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Hi Emily, He left some comments regarding normalization. Here is the relevant quote: > The EList object produced by dpcQuant(), containi…
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Comment: Question about the filterByExpr function inputs in edgeR
Answer: Question about the filterByExpr function inputs in edgeR
Answer: Question about the filterByExpr function inputs in edgeR
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