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News:
List of Deprecated Packages for Bioc3.18
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9 months ago • updated 10 hours ago
shepherl
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[Pre-print] Transcriptome-scale spatial gene expression in the human dorsolateral prefrontal cortex
biorxiv
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Leonardo Collado Torres
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News:
List of Deprecated Packages for Bioc3.19
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6 weeks ago • updated 5 days ago
shepherl
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57
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Bioconductor
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5 days ago
shepherl
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Course Manipulation of NGS Data for Genomic and Population Genetics Analyses
sequencing
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6 days ago
communication
• 0
0
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70
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News:
Call for proposals: European CarpentryConnect - 12-14 November 2024, at EMBL Heidelberg
carpentry
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9 days ago
Wolfgang Huber
★ 13k
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1
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224
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News:
Bioconductor 3.19 Release Schedule
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6 weeks ago • updated 22 days ago
shepherl
3.8k
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112
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News:
Deadline Extended - BioC2024 Abstracts and Sticker Contest - April 1st!
BioC2024
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Bioconductor
26 days ago
Maria Doyle
▴ 70
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102
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News:
Nominations for Bioconductor Awards 2024!
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Bioconductor
Bioc204
26 days ago
shepherl
3.8k
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2
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updated 29 days ago by
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Maria Doyle
▴ 70
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News:
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BioC2024
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Maria Doyle
▴ 70
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6 weeks ago
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8 weeks ago • updated 6 weeks ago
shepherl
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128
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Online course: Mass Spectrometry and Proteomics with R/Bioconductor
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6 weeks ago
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147
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Bioconductor
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6 weeks ago
Maria Doyle
▴ 70
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146
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News:
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9 weeks ago
Maria Doyle
▴ 70
2
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209
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Upholding our core values: a reminder of the Bioconductor Code of Conduct
Bioconductor
9 weeks ago
Maria Doyle
▴ 70
3
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279
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Bioconductor.org has a new look!
Bioconductor
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written 3 months ago by
shepherl
3.8k
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260
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updated 10 weeks ago by
Lori
• 0 • written 3 months ago by
shepherl
3.8k
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183
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Bioconductor
11 weeks ago
shepherl
3.8k
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200
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MSstats
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12 weeks ago
kohler.d
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News:
Ensembl 111 has been released
Ensembl
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3 months ago
Benjamin
▴ 30
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0
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195
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Online course - Flow cytometry data analysis with R/Bioconductor
flowDensity
flowCore
3 months ago
info
▴ 10
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0
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242
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News:
Online course - FLOW CYTOMETRY DATA ANALYSIS WITH R/BIOCONDUCTOR
Bioconductor
FlowCytometryData
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3 months ago
info
▴ 10
5
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1
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412
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News:
Bioconductor 3.18 is Released!
Packages
Bioconductor
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written 5 months ago by
shepherl
3.8k
1
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News:
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Bioc2022
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written 2.1 years ago by
shepherl
3.8k
1
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2
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630
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written 17 months ago by
Peter Hickey
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466
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News:
Bioconductor's Transition Away from Twitter/X
Bioconductor
5 months ago
Maria Doyle
▴ 70
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0
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265
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CRAN downtime
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Bioconductor
5 months ago
shepherl
3.8k
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0
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368
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News:
EMBO|EMBL Conference "AI and Biology"
EMBL
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AI
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5 months ago
Wolfgang Huber
★ 13k
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0
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342
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News:
COURSE - Developing R/Bioconductor Packages for Genomics
Bioconductor
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6 months ago
info
▴ 10
0
votes
4
replies
682
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News:
Important Bioconductor Release 3.18 deadlines this week
Release
Devel
release
devel
updated 6 months ago by
Guido Hooiveld
★ 3.9k • written 6 months ago by
shepherl
3.8k
1
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0
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356
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News:
Bioconductor 3.18 db0s, OrgDbs, and TxDbs now available
db0
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Annotation
6 months ago
kayla.interdonato
▴ 160
0
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389
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News:
Bioconductor 3.18 Release Schedule
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7 months ago
shepherl
3.8k
1
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1
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1.4k
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News:
Bioinformatics Summer School - July 2019 - UCLouvain (Belgium)
RNAseq
deseq2
proteomics
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workshop
News
written 5.1 years ago by
Laurent Gatto
1.6k
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582
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News:
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Events
BioCAsia
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7 months ago
Maria Doyle
▴ 70
0
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0
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430
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News:
Bioconductor.org website new design - We Need Your Input!
Bioconductor
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8 months ago
Maria Doyle
▴ 70
0
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0
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14
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Spam:
Spreading Smiles with Group Greeting Cards!
CARNIVAL
8 months ago
carterethan745
0
0
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2
replies
1.1k
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News:
Final List of Deprecated Packages for Bioc3.7
deprecate
package
release
News
written 6.0 years ago by
shepherl
3.8k
0
votes
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1.4k
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News:
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ensembldb
biomaRt
updated 9 months ago by
Michael Love
41k • written 9 months ago by
Benjamin
▴ 30
0
votes
0
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428
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News:
Reminder: BioC2023 in-person registration closes 19th July!
Bioconductor
BioC2023
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9 months ago
Maria Doyle
▴ 70
0
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0
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516
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News:
Course - Network Analysis in Systems Biology with R/Bioconductor
Bioconductor
Network
RNASeqData
SystemsBiology
9 months ago
info
▴ 10
1
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349
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News:
Bioconductor Website Redesign - We Need Your Input!
Bioconductor
Website
10 months ago
shepherl
3.8k
1
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692
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News:
Join the Community Advisory Board -- upcoming elections -- deadline Today
Bioconductor
CAB
bioconductoroversight
community
written 16 months ago by
shepherl
3.8k
0
votes
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reply
1.2k
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News:
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presentation
BioC2023
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Bioconductor
written 14 months ago by
Maria Doyle
▴ 70
0
votes
2
replies
836
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News:
List of Deprecated Packages for Bioc3.17
Bioconductor
Deprecation
Devel
devel
12 months ago • updated 10 months ago
shepherl
3.8k
0
votes
0
replies
338
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News:
May 31st is the last day to nominate for Bioc2023 Awards!
Bioconductor
Awards
Bioc2023
Recognition
10 months ago
shepherl
3.8k
0
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0
replies
439
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News:
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Bioconductor
Community
BioC2023
10 months ago
Maria Doyle
▴ 70
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Comment: FilterByExpr low counts with small sample size
by
Gordon Smyth
50k
As always, it helps to see code. Are you running `voom` or `voomLmFit`? Did you run `normLibSizes()` in edgeR prior to `voom`? Are you star…
Comment: Batch correction and repeated measures
by
Gordon Smyth
50k
In your code, it was clear that `expr.mat` was a matrix rather than a DGEList, so it has to be a count matrix. If you have a DGEList object…
Comment: Methylation Analysis experiment design using Limma
by
Gordon Smyth
50k
I don't analyse methylation arrays so cannot advise on specific limma settings for that type of data. Please follow the advice of the methy…
Comment: Light difference when using coef vs omit a group when compare 3 groups.
by
Chris
• 0
Hi Gordon, thank you so much for further guidance! I discussed this issue with psychology doctor who treat Alzheimer patients and they don'…
Comment: Single-Cell Data Simulation from Bulk RNA-seq
by
wichaidi
• 0
Hi - I am wondering what you decided to do. I am currently in a similar condition where I need to create a toy scRNAseq data from bulk.
Votes
Answer: How many of my genes from my gene list are in each KEGG pathway?
Comment: Light difference when using coef vs omit a group when compare 3 groups.
DESeq2 variance transformation error and plot dispersion Estimate
A: DESeq2 variance transformation error and plot dispersion Estimate
ensembl to hgnc symbols creates duplicates
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