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News:
markdown is coming to the support site
markdown
News
6.8 years ago • updated 6.2 years ago
Lucas Schiffer
▴ 240
14
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8
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2.6k
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News:
Bioconductor packages now each have a DOI.
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updated 6.6 years ago by
Martin Morgan
25k • written 6.7 years ago by
Sean Davis
21k
13
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3
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2.1k
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Bioconductor teaching week
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Carpentries
written 20 months ago by
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1.6k
13
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1
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8.3 years ago
Martin Morgan
25k
12
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1.9k
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DOI for packages
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6.5 years ago
shepherl
3.8k
11
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News:
Rsubread now available for Windows
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4.7 years ago • updated 4.6 years ago
Gordon Smyth
50k
11
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2.1k
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News:
Bioconductor 3.0 is released!
news
News
9.5 years ago
Dan Tenenbaum
★ 8.2k
10
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0
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1.7k
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News:
European Bioconductor meeting 2017, 4 / 5 - 6 December, Cambridge, UK
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6.7 years ago • updated 6.5 years ago
Aaron Lun
★ 28k
10
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15
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2.8k
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News:
BioC 2017: Where Software and Biology Connect, 26 / 27 - 28 July, Boston, MA
conference
bioc2017
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7.1 years ago • updated 6.8 years ago
Martin Morgan
25k
10
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3
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3.1k
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News:
Updates to BiocStyle formatting
BiocStyle
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rmarkdown
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News
6.7 years ago
Andrzej Oleś
▴ 750
10
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0
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2.7k
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News:
Professor James Taylor
in memoriam
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4.1 years ago
Martin Morgan
25k
10
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2
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912
views
News:
SUPPORT SITE UPGRADE COMPLETE
SupportSite
updated 3.5 years ago by
Steve Lianoglou
★ 13k • written 3.5 years ago by
shepherl
3.8k
9
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8
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6.7k
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News:
new package `ggtree` in devel branch
ggtree
phylogenetic
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updated 9.2 years ago by
remi.tournebize
▴ 10 • written 9.3 years ago by
Guangchuang Yu
★ 1.2k
9
votes
4
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2.8k
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News:
Experimental data package 'seqc'
seqc
rsubread
featurecounts
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ercc
News
9.4 years ago
Wei Shi
★ 3.6k
9
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1
reply
2.2k
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News:
Ensembl release 80 is out!
biomart
Ensembl
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Rat
1000 genomes phase 3
News
updated 8.9 years ago by
Sonali Arora
▴ 390 • written 8.9 years ago by
Thomas Maurel
▴ 800
9
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7
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3.0k
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News:
Conference: BioC 2016: Where Software and Biology Connect, Stanford, 24-26 June
BioC2016
Conference
News
updated 7.8 years ago by
shepherl
3.8k • written 8.3 years ago by
Martin Morgan
25k
8
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0
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844
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News:
Bioconductor 3.15 is Released!
Software
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Bioconductor
24 months ago
shepherl
3.8k
8
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1
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2.8k
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News:
Bioconductor 3.5 is released
bioconductor
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News
updated 7.0 years ago by
Hervé Pagès
16k • written 7.0 years ago by
Valerie Obenchain
★ 6.8k
8
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10
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2.1k
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News:
Bioconductor 3.2 is released!
news
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updated 8.5 years ago by
JunLVI
▴ 40 • written 8.5 years ago by
Dan Tenenbaum
★ 8.2k
8
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0
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1.5k
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News:
Recent course materials now easily searchable
course-material
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updated 9.6 years ago by
Wolfgang Huber
★ 13k • written 9.7 years ago by
Dan Tenenbaum
★ 8.2k
8
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0
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883
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News:
Bioconductor 3.14 is Released!
release
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2.5 years ago
shepherl
3.8k
8
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2
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BioCAsia, 29-30th November 2018, Melbourne, Australia
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updated 5.4 years ago by
Gordon Smyth
50k • written 5.7 years ago by
Steve Pederson
▴ 170
7
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4
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1.7k
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News:
Bioconductor 3.7 is released
bioconductor
release
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written 6.0 years ago by
Valerie Obenchain
★ 6.8k
7
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5
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2.9k
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European Bioconductor Developers Meeting: Cambridge 7/8th December 2015
developers
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updated 8.5 years ago by
Laurent Gatto
1.6k • written 8.6 years ago by
Mark Dunning
★ 1.1k
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1
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1.4k
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Bioconductor Community Advisory Board Nominees
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updated 4.2 years ago by
Sean Davis
21k • written 4.2 years ago by
Matthew Ritchie
▴ 1000
7
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0
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1.9k
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News:
Announcing Docker containers for Bioconductor
docker
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9.3 years ago
Dan Tenenbaum
★ 8.2k
6
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0
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2.3k
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News:
Bioconductor git server is now LIVE!
git
github
svn
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6.7 years ago
nitesh.turaga
▴ 140
6
votes
0
replies
847
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News:
Bioconductor 3.10 is released!!
release
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bioconductor
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4.5 years ago
shepherl
3.8k
6
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0
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1.0k
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News:
Bioconductor Technical Advisory Board
bioconductor oversight
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4.9 years ago
Martin Morgan
25k
6
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0
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1.9k
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Bioconductor 3.4 is released
news
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release
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7.5 years ago
Hervé Pagès
16k
6
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0
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1.3k
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Winners of the 1st Shiny Contest: iSEE
iSEE
shiny
summarizedExperiment
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5.1 years ago
Aaron Lun
★ 28k
6
votes
1
reply
1.2k
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News:
BioC2019 June 24-27 in New York City
conference
News
5.5 years ago
Levi Waldron
★ 1.1k
6
votes
3
replies
2.3k
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News:
New Bioconductor package for dbSNP151
SNPlocs.Hsapiens.dbSNP151.GRCh38
BSgenome
News
5.8 years ago
Hervé Pagès
16k
6
votes
0
replies
2.6k
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News:
F1000 research sponsored prize for contribution to Support forum
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News
8.4 years ago
Mark Dunning
★ 1.1k
6
votes
0
replies
2.1k
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News:
BioC 2015 Annual Conference
BioC2015
News
9.0 years ago • updated 8.8 years ago
Martin Morgan
25k
6
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0
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1.1k
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News:
New Package Submission Process
news
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submit package
News
updated 7.9 years ago by
Martin Morgan
25k • written 7.9 years ago by
Valerie Obenchain
★ 6.8k
6
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6
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3.3k
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News:
Bioconductor Git/GitHub Mirrors
git
github
git-svn bridge
subversion
News
updated 8.9 years ago by
Guangchuang Yu
★ 1.2k • written 8.9 years ago by
Dan Tenenbaum
★ 8.2k
5
votes
5
replies
2.0k
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News:
Ensembl 88 is out!
ensembl
ensembl mart
biomart
e!88
News
7.1 years ago
Thomas Maurel
▴ 800
5
votes
7
replies
1.5k
views
News:
Updated support site
news
News
9.6 years ago
Martin Morgan
25k
5
votes
0
replies
1.1k
views
News:
Course announcement: Statistical Data Analysis for Genome Scale Biology (CSAMA) - Brixen, Italy 21-26 July 2019
csama
News
5.1 years ago
Wolfgang Huber
★ 13k
5
votes
1
reply
3.3k
views
News:
Bioconductor-related papers -- special F1000Research collection for Bioc2016
publication
workflows
benchmark
teaching
News
updated 8.1 years ago by
thomas.ingraham
▴ 10 • written 8.1 years ago by
Wolfgang Huber
★ 13k
5
votes
2
replies
1.4k
views
News:
BioC2019 talk/workshop/scholarship submission deadline MARCH 15
BioC2019
News
updated 5.2 years ago by
Julie Zhu
★ 4.3k • written 5.2 years ago by
Levi Waldron
★ 1.1k
5
votes
0
replies
1.0k
views
News:
Bioconductor 3.13 is Released!
Release
Bioconductor
Packages
Software
2.9 years ago
shepherl
3.8k
5
votes
0
replies
2.1k
views
News:
edX online course introducing Bioconductor now up and running
annotation
bioconductor
News
updated 6.4 years ago by
Martin Morgan
25k • written 6.4 years ago by
Vincent J. Carey, Jr.
6.7k
5
votes
0
replies
961
views
News:
Bioconductor 3.6 is released
bioconductor
news
release
News
6.5 years ago
Valerie Obenchain
★ 6.8k
5
votes
0
replies
2.2k
views
News:
Join the Bioconductor Community Advisory Board
bioconductoroversight
community
CAB
2.3 years ago • updated 2.2 years ago
shepherl
3.8k
5
votes
5
replies
2.8k
views
News:
Invitation to submit articles to the Bioconductor gateway on F1000Research
publication
News
6.1 years ago
Sean Davis
21k
5
votes
0
replies
5.3k
views
News:
Bioconductor Package Archives
bioconductor
archive
news
News
6.5 years ago
Valerie Obenchain
★ 6.8k
5
votes
1
reply
1.7k
views
News:
Bioc2015 conference ongoing now.
bioconductor
conference
News
8.8 years ago
Sean Davis
21k
5
votes
2
replies
2.7k
views
News:
Ensembl release 81 is out!
human
mouse
GRCh38
biomart
Ensembl
News
updated 8.8 years ago by
Sonali Arora
▴ 390 • written 8.8 years ago by
Thomas Maurel
▴ 800
492 results • Page
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Comment: PCA plot suggestions
by
JKim
• 0
cross post: https://www.biostars.org/p/9593486/
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
James W. MacDonald
65k
You cannot correct for technical variability due to batch if samples are nested in batch. The technical and biological differences are comp…
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
James W. MacDonald
65k
You will need to show some reproducible code for anybody to track this down. Please note that `DESeq2` has been used by thousands of people…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
Alexandre
• 0
My code for the sessionInfo() . If the pictures are too big, I will downsize them. THank you again for reading my post ! ```r > sessionInf…
Comment: Reproducibility issue with scran together with lapply and BiocParallel
by
ATpoint
★ 4.0k
Thanks Aaron for the response. RNGseed (for me) has no effect. I actually stumbled over this in one of my analysis where I have a constant …
Votes
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
C: null model and DEXSeqDataSet object in DEXSEQ
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
A: How to explain how DESeq2 works to someone with zero bioinformatics background?
Answer: Interpret plot from DiffBind
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