34
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21
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14k
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32
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3.3 years ago Batool ▴ 370
16
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10.4 years ago • updated 7.9 years ago Gordon Smyth 50k
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5.4 years ago Deleted ▴ 70
14
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1
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1.9k
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it paused in line **byte-compile and prepare package for lazy loading** when install package EnsDb.Hsapiens.v75
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updated 3.3 years ago by ▴ 370 • written 3.3 years ago by ▴ 70
12
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2
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1.4k
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3.3 years ago Batool ▴ 370
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4.8 years ago m93 ▴ 10
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8.0 years ago enricoferrero ▴ 660
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5.9 years ago Wolfgang Huber ★ 13k
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updated 2.8 years ago by ▴ 490 • written 3.4 years ago by ▴ 60
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9.0 years ago Agaz Hussain Wani ▴ 260
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8.2 years ago Jurat Shahidin ▴ 80
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updated 2.7 years ago by • 0 • written 3.0 years ago by 6.7k
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14 months ago Bazingastats • 0
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17.8 years ago • updated 8.3 years ago Gordon Smyth 50k
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plotDEXSeq error in plot.window(xlim = c(0, 1), ylim = c(0, max(matr))) : need finite 'ylim' values
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7.2 years ago fizer ▴ 30
5
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1
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2.5k
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7.1 years ago j.bergenstrahle ▴ 80
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7.8 years ago Danielle Denisko ▴ 30
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5.5 years ago khp ▴ 30
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3.5 years ago lirongrossmann ▴ 40
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8.6 years ago n.huckle ▴ 30
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updated 2.1 years ago by ▴ 40 • written 2.1 years ago by • 0
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updated 2.1 years ago by ★ 2.0k • written 2.1 years ago by ▴ 20
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Support for new Illumina human methylation EPIC array v2
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7.7 years ago kevin.rue ▴ 350
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5.9 years ago slinker ▴ 20
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5.2 years ago S.Webb6 ▴ 40
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8.8 years ago Eugene • 0
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8.3 years ago Deepak Tanwar ▴ 10
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2.5 years ago k___ ▴ 30
4
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2.4 years ago xiaofeiwang18266 ▴ 50
4
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4.8 years ago vm ▴ 30
4
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14 months ago Robert Castelo ★ 3.3k
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15.8 years ago Gordon Smyth 50k
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20 months ago Maryam.sed1400 • 0
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6.6 years ago Assa Yeroslaviz ★ 1.5k
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3.0 years ago • updated 2.9 years ago aspangl1 ▴ 30
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13 months ago Dmitry • 0
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8.3 years ago igor ▴ 40
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6.8 years ago brhead ▴ 40
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1,000 results • Page 1 of 20
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Comment: Reproducibility issue with scran together with lapply and BiocParallel by ATpoint ★ 4.0k
Thanks Aaron for the response. RNGseed (for me) has no effect. I actually stumbled over this in one of my analysis where I have a constant …
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0
Thank you for your comment! 1)"Your contrast is comparing LGR5 to Homeostasis." means (Lgr5)/(Homeostasis). Is it right? Then, I think if…
Answer: Reproducibility issue with scran together with lapply and BiocParallel by Aaron Lun ★ 28k
IIRC **BiocParallel** switches to a different RNG when inside its own functions like `bplapply` - specifically L'Ecuyer-CMRG, as opposed to…
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This looks terrible for RNASeq data, because it's not RNASeq data. It's a matrix of pretty random numbers, which you know because you poste…
Comment: DESeq2 output used for PCA plot on R studio by Aaliya • 0
I had taken this code from internet, but after reading about it and I did on my own, I would be making a post to ask for the suggestions if…
Votes
C: null model and DEXSeqDataSet object in DEXSEQ
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
A: How to explain how DESeq2 works to someone with zero bioinformatics background?
Answer: Interpret plot from DiffBind
Answer: How to retrieve gene ontology GO class from gene list?
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