8
votes
7
answers
1.3k
views
5 follow
7
answers
reactome.db is not updated?
genesetenrichment pathways reactome.db written 3.0 years ago by Guangchuang Yu800 • updated 2.6 years ago by willem.ligtenberg150
2
votes
0
answers
379
views
5 follow
0
answers
0
votes
2
answers
421
views
2
answers
globaltest question
pathways probe affy written 11.2 years ago by mike Ad.30 • updated 11.2 years ago by Oosting, J. PATH550
0
votes
2
answers
441
views
2
answers
Filtering gene list prior to statistical testing
pathways written 9.4 years ago by Johan van Heerden40 • updated 9.4 years ago by rgentleman5.5k
1
vote
4
answers
975
views
4
answers
reactome.db: reactome IDs not mapped to pathway names
annotation pathways written 3.0 years ago by Johannes Rainer1.0k • updated 2.6 years ago by willem.ligtenberg150
0
votes
1
answer
327
views
1
answer
GeneSetCollection using EntrezID
annotation pathways gseabase written 8.0 years ago by Javier Pérez Florido830 • updated 8.0 years ago by Martin Morgan ♦♦ 20k
0
votes
1
answer
376
views
1
answer
Regarding KEGGgraph
pathways network process written 7.9 years ago by anupam sinha270 • updated 7.9 years ago by Wolfgang Huber13k
0
votes
2
answers
349
views
2
answers
retrieve genes names after KEGG hypergeometric test
annotation pathways go rat2302 probe affy category written 7.1 years ago by Mike Walter230 • updated 7.0 years ago by Iain Gallagher910
0
votes
1
answer
561
views
1
answer
0
votes
2
answers
367
views
2
answers
R: Pathway Information
genetics pathways cancer probe globaltest written 12.4 years ago by John Zhang2.9k • updated 12.4 years ago by Alberto Goldoni360
0
votes
2
answers
363
views
2
answers
extracting interactions between members of the KEGG pathways
pathways infrastructure cancer graph written 11.7 years ago by Jane Fridlyand90 • updated 11.7 years ago by rgentleman5.5k
0
votes
1
answer
530
views
1
answer
KEGG package
pathways written 10.3 years ago by Yihuan Xu130 • updated 10.3 years ago by John Zhang2.9k
0
votes
3
answers
632
views
3
answers
GSEA and Broad gene sets
pathways gseabase written 10.0 years ago by Brian Hare30 • updated 10.0 years ago by Weiwei Shi1.2k
0
votes
1
answer
859
views
1
answer
Help using ENSMUSG ids in GOstats
microarray pathways gostats written 9.5 years ago by John Reid30 • updated 9.5 years ago by rgentleman5.5k
0
votes
1
answer
300
views
1
answer
GO over representation analysis
annotation pathways go organism db0 annbuilder process maanova annotationdbi written 9.2 years ago by Marc Carlson7.2k • updated 9.2 years ago by Kort, Eric220
0
votes
1
answer
294
views
1
answer
Rredland installation difficulties
pathways graph rredland written 8.6 years ago by Paul Shannon1.1k • updated 8.6 years ago by Patrick Aboyoun1.6k
0
votes
1
answer
356
views
1
answer
KEGGgraph: any way to obtain 'outcome' nodes?
pathways kegggraph written 7.9 years ago by Paul Shannon1.1k • updated 7.9 years ago by Fraser Sim270
0
votes
1
answer
341
views
1
answer
KEGG orthology linking (K numbers )?
pathways written 7.3 years ago by Fabian Grammes30 • updated 7.3 years ago by Vincent J. Carey, Jr.6.2k
0
votes
2
answers
504
views
2
answers
GO enrichment and pathways
pathways go written 6.6 years ago by Radhouane Aniba240 • updated 6.6 years ago by Yuan Hao240
0
votes
1
answer
330
views
1
answer
A bug in either KEGG or KEGGSOAP?
pathways keggsoap written 5.8 years ago by Sang Chul Choi230 • updated 5.8 years ago by Marc Carlson7.2k
0
votes
1
answer
972
views
1
answer
Kegg pathways overlay with log fold change values
pathways limma spia written 5.4 years ago by Amit Kumar Kashyap50 • updated 5.4 years ago by alessandro brozzi120
0
votes
1
answer
1.6k
views
1
answer
LogFC query in Limma
pathways convert written 4.8 years ago by Roopa Subbaiaih130 • updated 4.8 years ago by Steve Lianoglou12k
1
vote
2
answers
435
views
2
answers
Metabolomic data analysis with papi / papiHtest() does not work as expected
pathways papi written 4.0 years ago by Guest User12k • updated 4.0 years ago by Aggio, Raphael20
0
votes
2
answers
1.2k
views
2
answers
use of voom function with attract package
pathways go attract written 3.6 years ago by Guest User12k • updated 3.6 years ago by Gordon Smyth32k
0
votes
1
answer
1.8k
views
1
answer
Pathway enrichment in bacteria metagenomes
metagenomics pathways written 3.0 years ago by francesca.defilippis40 • updated 3.0 years ago by Luo Weijun1.4k
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