8
votes
7
answers
1.6k
views
5 follow
7
answers
reactome.db is not updated?
genesetenrichment pathways reactome.db written 3.8 years ago by Guangchuang Yu1.0k • updated 3.5 years ago by willem.ligtenberg150
2
votes
0
answers
505
views
5 follow
0
answers
0
votes
2
answers
528
views
2
answers
globaltest question
pathways probe affy written 12.0 years ago by mike Ad.30 • updated 12.0 years ago by Oosting, J. PATH550
0
votes
2
answers
539
views
2
answers
Filtering gene list prior to statistical testing
pathways written 10.2 years ago by Johan van Heerden40 • updated 10.2 years ago by rgentleman5.5k
1
vote
4
answers
1.2k
views
4
answers
reactome.db: reactome IDs not mapped to pathway names
annotation pathways written 3.9 years ago by Johannes Rainer1.3k • updated 3.5 years ago by willem.ligtenberg150
0
votes
1
answer
448
views
1
answer
GeneSetCollection using EntrezID
annotation pathways gseabase written 8.8 years ago by Javier PĂ©rez Florido830 • updated 8.8 years ago by Martin Morgan ♦♦ 22k
0
votes
1
answer
523
views
1
answer
Regarding KEGGgraph
pathways network process written 8.7 years ago by anupam sinha270 • updated 8.7 years ago by Wolfgang Huber13k
0
votes
2
answers
420
views
2
answers
retrieve genes names after KEGG hypergeometric test
annotation pathways go rat2302 probe affy category written 7.9 years ago by Mike Walter230 • updated 7.9 years ago by Iain Gallagher910
0
votes
1
answer
754
views
1
answer
2
votes
1
answer
567
views
1
answer
Pathview graph with multiple states/samples or time series
pathways graph written 4.9 years ago by Luo Weijun1.4k • updated 7 months ago by atanas.kamburov0
0
votes
2
answers
451
views
2
answers
R: Pathway Information
genetics pathways cancer probe globaltest written 13.3 years ago by John Zhang2.9k • updated 13.3 years ago by Alberto Goldoni360
0
votes
2
answers
525
views
2
answers
extracting interactions between members of the KEGG pathways
pathways infrastructure cancer graph written 12.5 years ago by Jane Fridlyand90 • updated 12.5 years ago by rgentleman5.5k
0
votes
1
answer
687
views
1
answer
KEGG package
pathways written 11.1 years ago by Yihuan Xu130 • updated 11.1 years ago by John Zhang2.9k
0
votes
3
answers
908
views
3
answers
GSEA and Broad gene sets
pathways gseabase written 10.8 years ago by Brian Hare30 • updated 10.8 years ago by Weiwei Shi1.2k
0
votes
1
answer
1.1k
views
1
answer
Help using ENSMUSG ids in GOstats
microarray pathways gostats written 10.4 years ago by John Reid30 • updated 10.4 years ago by rgentleman5.5k
0
votes
1
answer
396
views
1
answer
GO over representation analysis
annotation pathways go organism db0 annbuilder process maanova annotationdbi written 10.1 years ago by Marc Carlson7.2k • updated 10.1 years ago by Kort, Eric220
0
votes
1
answer
367
views
1
answer
Rredland installation difficulties
pathways graph rredland written 9.4 years ago by Paul Shannon1.1k • updated 9.4 years ago by Patrick Aboyoun1.6k
0
votes
1
answer
503
views
1
answer
KEGGgraph: any way to obtain 'outcome' nodes?
pathways kegggraph written 8.8 years ago by Paul Shannon1.1k • updated 8.8 years ago by Fraser Sim270
0
votes
1
answer
511
views
1
answer
KEGG orthology linking (K numbers )?
pathways written 8.1 years ago by Fabian Grammes30 • updated 8.1 years ago by Vincent J. Carey, Jr.6.2k
0
votes
2
answers
758
views
2
answers
GO enrichment and pathways
pathways go written 7.4 years ago by Radhouane Aniba240 • updated 7.4 years ago by Yuan Hao240
0
votes
1
answer
472
views
1
answer
A bug in either KEGG or KEGGSOAP?
pathways keggsoap written 6.7 years ago by Sang Chul Choi230 • updated 6.7 years ago by Marc Carlson7.2k
0
votes
1
answer
1.3k
views
1
answer
Kegg pathways overlay with log fold change values
pathways limma spia written 6.3 years ago by Amit Kumar Kashyap50 • updated 6.3 years ago by alessandro brozzi120
0
votes
1
answer
1.9k
views
1
answer
LogFC query in Limma
pathways convert written 5.6 years ago by Roopa Subbaiaih130 • updated 5.6 years ago by Steve Lianoglou12k
1
vote
2
answers
566
views
2
answers
Metabolomic data analysis with papi / papiHtest() does not work as expected
pathways papi written 4.8 years ago by Guest User12k • updated 4.8 years ago by Aggio, Raphael20
0
votes
2
answers
1.6k
views
2
answers
use of voom function with attract package
pathways go attract written 4.4 years ago by Guest User12k • updated 4.4 years ago by Gordon Smyth35k
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