plotma Posts

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[DESeq2] normalization doesn't remove my mean-variance trend

normalization deseq2 plotma meansdplot written 3.7 years ago by aravenscraft • 0

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limma::plotMA displays one sample vs. others

limma plotma written 3.6 years ago by Lisa Cohen • 50 • updated 3.6 years ago by Gordon Smyth ♦ 37k

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PlotMA Filters for DeSEQ2 ; adjusting script

rnaseq deseq deseq2 rna-seq plotma written 3.1 years ago by sjs0282 • 0 • updated 3.1 years ago by Michael Love ♦ 22k

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MA plot in R

R rstudio plotma written 22 months ago by g.k • 0

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457

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How to exactly replicate the results from plotMA in DESeq2 ?

deseq2 plotma written 19 months ago by Yvan Wenger • 50

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plotMA (DESeq2) Issue

rnaseq deseq2 plotma logfoldchange written 13 months ago by ap_vc21 • 0 • updated 13 months ago by Michael Love ♦ 22k

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Why does backgroundCorrect with method="none" produce different plots with plotMA()?

agilent background correction plotma single channel written 10 months ago by CantExitVIM • 10 • updated 10 months ago by Gordon Smyth ♦ 37k