Showing: purecnreset
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Bug Report/Question for PureCN: createSNPBlacklist() Error
purecn written 3.2 years ago by klminch10 • updated 3.2 years ago by markus.riester110
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4
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Error in running example code of PureCN
purecn written 2.9 years ago by rahulk.aiims0 • updated 2.9 years ago by markus.riester110
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how to make sure PureCN gets somatic status from VCF?
purecn written 2.8 years ago by eddieasalinas0 • updated 2.8 years ago by markus.riester110
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PureCN can classify indel variants as germline vs. somatic ?
indel purecn somatic germline written 2.3 years ago by pathkim0 • updated 2.3 years ago by markus.riester110
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358
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errors in Purecn callLOH
purecn written 23 months ago by xiao.qiao.liu0 • updated 23 months ago by markus.riester110
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347
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errors in version 1.7.53
purecn written 23 months ago by xiao.qiao.liu0 • updated 23 months ago by markus.riester110
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238
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PureCN support for indels
indels purecn written 17 months ago by twtoal0 • updated 17 months ago by markus.riester110
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476
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Understanding PureCN and its germline SNPs
snp purecn germline written 17 months ago by twtoal0 • updated 15 months ago by kakbrus0
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No CNAs or SNVs in results
purecn written 17 months ago by twtoal0
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PureCN Panel of Normals contents
purecn written 17 months ago by twtoal0 • updated 17 months ago by markus.riester110
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2
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PureCN warning: test.num.copy outside recommended range
warning purecn written 17 months ago by twtoal0 • updated 17 months ago by markus.riester110
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VCF file non-SNP germline mutations
snp vcf purecn written 16 months ago by twtoal0 • updated 16 months ago by markus.riester110
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PureCN Release Notes
release purecn written 16 months ago by twtoal0 • updated 16 months ago by James W. MacDonald51k
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coverage QC file mean duplication and "mom" columns
coverage purecn written 16 months ago by twtoal0 • updated 16 months ago by markus.riester110
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Dx.R somatic_ontarget column
purecn written 16 months ago by twtoal0 • updated 16 months ago by markus.riester110
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265
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PureCN.R _variants.csv file prior.somatic and somatic variant count
purecn somatic mutations written 16 months ago by twtoal0 • updated 16 months ago by markus.riester110
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PureCN use of VCF QUAL column for filtering when column is dot
vcf purecn qual written 16 months ago by twtoal0 • updated 16 months ago by markus.riester110
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PureCN removemapq0 parameter
purecn removemapq0 written 16 months ago by twtoal0 • updated 16 months ago by markus.riester110
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Is C adjusted for purity?
purecn adjusted c written 16 months ago by twtoal0 • updated 16 months ago by markus.riester110
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Is mean adjusted for purity?
purecn mean ratio written 15 months ago by twtoal0 • updated 15 months ago by markus.riester110
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