3
votes
1
answer
256
views
1
answer
DESeq2 batch effect with and without interaction model
deseq2 R linear model rna-seq design matrix written 5 months ago by gdagstn0 • updated 5 months ago by Michael Love17k
10
votes
1
answer
272
views
1
answer
0
votes
1
answer
190
views
1
answer
Limma: how to account for twin data (both MZ and DZ twins)?
limma design rna-seq formula twins written 5 months ago by Simone0 • updated 5 months ago by Aaron Lun19k
3
votes
1
answer
242
views
1
answer
0
votes
1
answer
205
views
1
answer
How many genes are appropriate for GO enrichment analysis
go annotate clusterprofiler rna-seq written 6 months ago by Jack0 • updated 6 months ago by k.vitting.seerup20
5
votes
1
answer
206
views
1
answer
Testing three-way interactions in DESeq2
rnaseq deseq2 interactions rna-seq written 6 months ago by red_bricks20 • updated 6 months ago by Michael Love17k
0
votes
1
answer
137
views
1
answer
differential splicing events and covariates
limma rna-seq alternative splicing written 6 months ago by lirongrossmann10 • updated 6 months ago by Gordon Smyth33k
0
votes
1
answer
201
views
1
answer
How to use RUVSeq in clustering problems?
clustering ruvseq rna-seq written 6 months ago by bioinfo2001420 • updated 6 months ago by davide risso650
1
vote
1
answer
166
views
1
answer
3
votes
1
answer
284
views
1
answer
DESeq2 time series contrasts between timepoints
deseq2 rna-seq written 6 months ago by gtho12340 • updated 6 months ago by Michael Love17k
0
votes
1
answer
276
views
1
answer
RNA-Seq Batch correction negative values
sva combat rna-seq scran batch-effect written 6 months ago by rmf0 • updated 6 months ago by Aaron Lun19k
0
votes
0
answers
182
views
0
answers
3
votes
2
answers
217
views
2
answers
0
votes
0
answers
189
views
0
answers
3
votes
1
answer
137
views
1
answer
Saving output from glmTreat to a csv file?
edger rna-seq written 7 months ago by mictadlo0 • updated 7 months ago by Aaron Lun19k
0
votes
0
answers
175
views
0
answers
3
votes
2
answers
312
views
2
answers
0
votes
0
answers
428
views
0
answers
1
vote
1
answer
483
views
1
answer
Does SC3 correct counts for gene length?
rna-seq single-cell scater sc3 biclustering written 8 months ago by rmf0 • updated 7 months ago by Vladimir Kiselev130
0
votes
1
answer
482
views
1
answer
Ballgown Error in file(file, "rt") : invalid 'description' argument
rna-seq ballgown written 7 months ago by vinayjrao0 • updated 7 months ago by Alyssa Frazee170
1
vote
1
answer
639
views
1
answer
0
votes
1
answer
565
views
1
answer
Subset data within DeSeq results object
deseq2 R rna-seq written 7 months ago by aorvedahl0 • updated 7 months ago by Michael Love17k
1
vote
1
answer
420
views
1
answer
RNA-seq differential analysis for continuous phenotypes
deseq2 rna-seq written 7 months ago by anpham0 • updated 7 months ago by Michael Love17k
1
vote
1
answer
417
views
1
answer
Installing old versions of cummeRbund
cummerbund rna-seq written 7 months ago by vinayjrao0 • updated 7 months ago by James W. MacDonald46k
2
votes
2
answers
485
views
2
answers
Retrieving data from NCBI GEO Problem and RNA-Seq Data Analysis
rnaseq limma geoquery edger rna-seq written 8 months ago by hkarakurt10 • updated 8 months ago by Sean Davis21k
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