8
votes
1
answer
190
views
1
answer
2
votes
1
answer
148
views
1
answer
RNA-seq: Time-course data normalisation with TPM
normalization deseq2 rna-seq tpm written 4 months ago by heikki.sarin0 • updated 4 months ago by Michael Love18k
0
votes
0
answers
68
views
0
answers
0
votes
1
answer
140
views
1
answer
Best way to analyze multiple treatments using DESeq2?
mirna deseq2 rna-seq written 4 months ago by michael.frech0 • updated 4 months ago by Michael Love18k
0
votes
1
answer
127
views
1
answer
0
votes
0
answers
83
views
0
answers
0
votes
1
answer
262
views
1
answer
voomWithQualityWeights, design and weights
voom rna-seq limma-voom voomwithqualityweights written 5 months ago by anne.biton0 • updated 5 months ago by Matthew Ritchie730
1
vote
1
answer
196
views
1
answer
RNA-seq Batch Correction
limma edger rna-seq removebatcheffect() written 5 months ago by cvu0 • updated 5 months ago by Aaron Lun20k
3
votes
1
answer
200
views
1
answer
DESeq2 batch effect modeling and matrix not full rank
rnaseq deseq2 rna-seq written 5 months ago by emmak20 • updated 5 months ago by Michael Love18k
6
votes
2
answers
889
views
2
answers
Is Limma's removeBatchEffect() and log2() commutative?
limma rna-seq removebatcheffect() written 2.3 years ago by Ekarl220 • updated 5 months ago by alakatos80
0
votes
1
answer
283
views
1
answer
1
vote
1
answer
229
views
1
answer
0
votes
0
answers
186
views
0
answers
0
votes
1
answer
194
views
1
answer
40
votes
3
answers
2.2k
views
3
answers
2
votes
2
answers
304
views
2
answers
0
votes
1
answer
195
views
1
answer
0
votes
1
answer
232
views
1
answer
3
votes
1
answer
401
views
1
answer
How to use limma to do regularization for Ballgown
limma rna-seq written 8 months ago by zoukai34120850 • updated 8 months ago by Aaron Lun20k
3
votes
1
answer
370
views
1
answer
DESeq2 batch effect with and without interaction model
deseq2 R linear model rna-seq design matrix written 8 months ago by gdagstn0 • updated 8 months ago by Michael Love18k
10
votes
1
answer
334
views
1
answer
0
votes
1
answer
229
views
1
answer
Limma: how to account for twin data (both MZ and DZ twins)?
limma design rna-seq formula twins written 9 months ago by Simone0 • updated 9 months ago by Aaron Lun20k
3
votes
1
answer
310
views
1
answer
0
votes
1
answer
254
views
1
answer
How many genes are appropriate for GO enrichment analysis
go annotate clusterprofiler rna-seq written 9 months ago by Jack0 • updated 9 months ago by k.vitting.seerup20
5
votes
1
answer
265
views
1
answer
Testing three-way interactions in DESeq2
rnaseq deseq2 interactions rna-seq written 9 months ago by red_bricks20 • updated 9 months ago by Michael Love18k
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