5
votes
3
answers
4.7k
views
5 follow
3
answers
4
votes
1
answer
2.8k
views
5 follow
1
answer
interpreting LRT results DESeq2
deseq2 rna-seq lrt written 3.5 years ago by solgakar@bi.technion.ac.il60 • updated 3.5 years ago by Michael Love19k
7
votes
2
answers
2.7k
views
5 follow
2
answers
Multi factor design edgeR/Deseq2
edger deseq2 rna-seq written 3.2 years ago by gthm20 • updated 3.2 years ago by Gordon Smyth35k
12
votes
2
answers
6.3k
views
5 follow
2
answers
3
votes
3
answers
1.9k
views
5 follow
3
answers
What does this error mean? - issue implementing SVA
sva rna-seq written 2.6 years ago by kmuench30 • updated 5 months ago by Sandip Darji0
10
votes
2
answers
1.2k
views
5 follow
2
answers
Filtering lowly expressed genes in voom-limma analysis
limma voom differential gene expression rna-seq written 2.1 years ago by rubi90 • updated 2.1 years ago by Gordon Smyth35k
1
vote
1
answer
616
views
5 follow
1
answer
14
votes
1
answer
234
views
5 follow
1
answer
18
votes
2
answers
1.4k
views
2
answers
6
votes
2
answers
973
views
2
answers
Is Limma's removeBatchEffect() and log2() commutative?
limma rna-seq removebatcheffect() written 2.4 years ago by Ekarl220 • updated 7 months ago by alakatos80
7
votes
2
answers
1.8k
views
2
answers
1
vote
3
answers
517
views
3
answers
Gene Ontology and Gene Set Enrichment
go gene ontology bioinformatics rna-seq gene set enrichment written 23 months ago by fromhj30410 • updated 23 months ago by Guangchuang Yu1.0k
1
vote
1
answer
405
views
1
answer
3
votes
1
answer
419
views
1
answer
5
votes
1
answer
330
views
1
answer
Testing three-way interactions in DESeq2
rnaseq deseq2 interactions rna-seq written 11 months ago by red_bricks20 • updated 11 months ago by Michael Love19k
8
votes
1
answer
249
views
1
answer
3
votes
1
answer
2.6k
views
1
answer
Find DEG from RNA-seq: What if have only RPKM data?
rpkm rna-seq deg written 3.5 years ago by Yue Zhao0 • updated 3.5 years ago by b.nota300
3
votes
1
answer
1.4k
views
1
answer
edgeR glmLRT and interaction effect: an example
edger interactions rna-seq glmlrt written 2.5 years ago by David Rengel70 • updated 2.5 years ago by Gordon Smyth35k
5
votes
2
answers
537
views
2
answers
Co-expression between host and pathogen genes
edger rna-seq written 2.4 years ago by jhj8910 • updated 2.4 years ago by Aaron Lun21k
9
votes
2
answers
2.3k
views
2
answers
0
votes
1
answer
469
views
1
answer
8
votes
2
answers
921
views
2
answers
How does edgeR compare to lme4?
edger rna-seq lme4 mixed model random effects written 2.2 years ago by Ekarl220 • updated 2.2 years ago by Gordon Smyth35k
1
vote
0
answers
523
views
0
answers
2
votes
1
answer
860
views
1
answer
adjusted p-values and p-values problems!
R rna-seq adjusted pvalue pvalue bonferroni written 23 months ago by fromhj30410 • updated 23 months ago by Michael Love19k
4
votes
1
answer
458
views
1
answer
RNA-seq analysis edgeR
edger rna-seq written 22 months ago by es87410 • updated 22 months ago by Ryan C. Thompson6.8k
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