4
votes
1
answer
2.1k
views
5 follow
1
answer
interpreting LRT results DESeq2
deseq2 rna-seq lrt written 2.9 years ago by solgakar@bi.technion.ac.il60 • updated 2.9 years ago by Michael Love16k
12
votes
2
answers
4.4k
views
5 follow
2
answers
10
votes
2
answers
810
views
5 follow
2
answers
Filtering lowly expressed genes in voom-limma analysis
limma voom differential gene expression rna-seq written 19 months ago by rubi80 • updated 19 months ago by Gordon Smyth32k
1
vote
1
answer
458
views
5 follow
1
answer
18
votes
2
answers
1.2k
views
2
answers
6
votes
2
answers
693
views
2
answers
Is Limma's removeBatchEffect() and log2() commutative?
limma rna-seq removebatcheffect() written 22 months ago by Ekarl210 • updated 29 days ago by alakatos80
7
votes
2
answers
1.0k
views
2
answers
1
vote
3
answers
389
views
3
answers
Gene Ontology and Gene Set Enrichment
go gene ontology bioinformatics rna-seq gene set enrichment written 16 months ago by fromhj30410 • updated 16 months ago by Guangchuang Yu890
1
vote
1
answer
334
views
1
answer
3
votes
1
answer
300
views
1
answer
5
votes
1
answer
167
views
1
answer
Testing three-way interactions in DESeq2
rnaseq deseq2 interactions rna-seq written 4 months ago by red_bricks20 • updated 4 months ago by Michael Love16k
3
votes
3
answers
3.6k
views
3
answers
3
votes
1
answer
2.1k
views
1
answer
Find DEG from RNA-seq: What if have only RPKM data?
rpkm rna-seq deg written 3.0 years ago by Yue Zhao0 • updated 3.0 years ago by b.nota290
6
votes
2
answers
2.1k
views
2
answers
Multi factor design edgeR/Deseq2
edger deseq2 rna-seq written 2.6 years ago by gthm10 • updated 2.6 years ago by Gordon Smyth32k
2
votes
0
answers
1.2k
views
0
answers
3
votes
1
answer
960
views
1
answer
edgeR glmLRT and interaction effect: an example
edger interactions rna-seq glmlrt written 23 months ago by David Rengel70 • updated 23 months ago by Gordon Smyth32k
5
votes
2
answers
473
views
2
answers
Co-expression between host and pathogen genes
edger rna-seq written 22 months ago by jhj8910 • updated 22 months ago by Aaron Lun18k
9
votes
2
answers
1.7k
views
2
answers
0
votes
1
answer
352
views
1
answer
8
votes
2
answers
652
views
2
answers
How does edgeR compare to lme4?
edger rna-seq lme4 mixed model random effects written 20 months ago by Ekarl210 • updated 20 months ago by Gordon Smyth32k
2
votes
1
answer
454
views
1
answer
adjusted p-values and p-values problems!
R rna-seq adjusted pvalue pvalue bonferroni written 16 months ago by fromhj30410 • updated 16 months ago by Michael Love16k
4
votes
1
answer
342
views
1
answer
RNA-seq analysis edgeR
edger rna-seq written 15 months ago by es87410 • updated 15 months ago by Ryan C. Thompson6.3k
3
votes
2
answers
402
views
2
answers
DESeq2 with contaminating cell types
deseq2 rna-seq written 13 months ago by hughes.drew80 • updated 13 months ago by Michael Love16k
1
vote
1
answer
226
views
1
answer
RNA-Seq comparisons of various sample
rna-seq written 12 months ago by minie0 • updated 12 months ago by Aaron Lun18k
3
votes
1
answer
306
views
1
answer
Question regarding best bioconductor package for RNA-seq
rna-seq packages written 11 months ago by Maximilian10 • updated 11 months ago by b.nota290
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