4
votes
1
answer
2.6k
views
5 follow
1
answer
interpreting LRT results DESeq2
deseq2 rna-seq lrt written 3.2 years ago by solgakar@bi.technion.ac.il60 • updated 3.2 years ago by Michael Love18k
7
votes
2
answers
2.5k
views
5 follow
2
answers
Multi factor design edgeR/Deseq2
edger deseq2 rna-seq written 3.0 years ago by gthm20 • updated 3.0 years ago by Gordon Smyth33k
12
votes
2
answers
5.5k
views
5 follow
2
answers
3
votes
3
answers
1.6k
views
5 follow
3
answers
What does this error mean? - issue implementing SVA
sva rna-seq written 2.4 years ago by kmuench30 • updated 11 weeks ago by Sandip Darji0
10
votes
2
answers
1.0k
views
5 follow
2
answers
Filtering lowly expressed genes in voom-limma analysis
limma voom differential gene expression rna-seq written 23 months ago by rubi90 • updated 23 months ago by Gordon Smyth33k
1
vote
1
answer
560
views
5 follow
1
answer
4
votes
3
answers
4.3k
views
3
answers
18
votes
2
answers
1.3k
views
2
answers
6
votes
2
answers
859
views
2
answers
Is Limma's removeBatchEffect() and log2() commutative?
limma rna-seq removebatcheffect() written 2.2 years ago by Ekarl210 • updated 5 months ago by alakatos80
7
votes
2
answers
1.5k
views
2
answers
1
vote
3
answers
462
views
3
answers
Gene Ontology and Gene Set Enrichment
go gene ontology bioinformatics rna-seq gene set enrichment written 20 months ago by fromhj30410 • updated 20 months ago by Guangchuang Yu990
1
vote
1
answer
380
views
1
answer
3
votes
1
answer
377
views
1
answer
5
votes
1
answer
246
views
1
answer
Testing three-way interactions in DESeq2
rnaseq deseq2 interactions rna-seq written 8 months ago by red_bricks20 • updated 8 months ago by Michael Love18k
8
votes
1
answer
174
views
1
answer
3
votes
1
answer
2.4k
views
1
answer
Find DEG from RNA-seq: What if have only RPKM data?
rpkm rna-seq deg written 3.3 years ago by Yue Zhao0 • updated 3.3 years ago by b.nota290
3
votes
1
answer
1.2k
views
1
answer
edgeR glmLRT and interaction effect: an example
edger interactions rna-seq glmlrt written 2.2 years ago by David Rengel70 • updated 2.2 years ago by Gordon Smyth33k
5
votes
2
answers
511
views
2
answers
Co-expression between host and pathogen genes
edger rna-seq written 2.2 years ago by jhj8910 • updated 2.2 years ago by Aaron Lun19k
9
votes
2
answers
2.1k
views
2
answers
0
votes
1
answer
429
views
1
answer
8
votes
2
answers
811
views
2
answers
How does edgeR compare to lme4?
edger rna-seq lme4 mixed model random effects written 2.0 years ago by Ekarl210 • updated 2.0 years ago by Gordon Smyth33k
2
votes
1
answer
657
views
1
answer
adjusted p-values and p-values problems!
R rna-seq adjusted pvalue pvalue bonferroni written 20 months ago by fromhj30410 • updated 20 months ago by Michael Love18k
4
votes
1
answer
416
views
1
answer
RNA-seq analysis edgeR
edger rna-seq written 19 months ago by es87410 • updated 19 months ago by Ryan C. Thompson6.8k
3
votes
2
answers
457
views
2
answers
DESeq2 with contaminating cell types
deseq2 rna-seq written 17 months ago by hughes.drew90 • updated 17 months ago by Michael Love18k
1
vote
1
answer
336
views
1
answer
RNA-Seq comparisons of various sample
rna-seq written 16 months ago by minie0 • updated 16 months ago by Aaron Lun19k
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