15
votes
2
answers
7.2k
views
8 follow
2
answers
7
votes
2
answers
1.1k
views
6 follow
2
answers
Is Limma's removeBatchEffect() and log2() commutative?
limma rna-seq removebatcheffect() written 2.6 years ago by Ekarl230 • updated 10 months ago by alakatos80
8
votes
2
answers
2.2k
views
6 follow
2
answers
5
votes
3
answers
5.2k
views
5 follow
3
answers
4
votes
1
answer
3.0k
views
5 follow
1
answer
interpreting LRT results DESeq2
deseq2 rna-seq lrt written 3.7 years ago by solgakar@bi.technion.ac.il60 • updated 3.7 years ago by Michael Love20k
7
votes
2
answers
3.1k
views
5 follow
2
answers
Multi factor design edgeR/Deseq2
edger deseq2 rna-seq written 3.4 years ago by gthm20 • updated 3.4 years ago by Gordon Smyth35k
3
votes
3
answers
2.1k
views
5 follow
3
answers
What does this error mean? - issue implementing SVA
sva rna-seq written 2.8 years ago by kmuench30 • updated 8 months ago by Sandip Darji0
10
votes
2
answers
1.3k
views
5 follow
2
answers
Filtering lowly expressed genes in voom-limma analysis
limma voom differential gene expression rna-seq written 2.4 years ago by rubi90 • updated 2.4 years ago by Gordon Smyth35k
1
vote
1
answer
686
views
5 follow
1
answer
15
votes
1
answer
395
views
5 follow
1
answer
18
votes
2
answers
1.5k
views
2
answers
1
vote
3
answers
585
views
3
answers
Gene Ontology and Gene Set Enrichment
go gene ontology bioinformatics rna-seq gene set enrichment written 2.2 years ago by fromhj30410 • updated 2.2 years ago by Guangchuang Yu1.1k
1
vote
1
answer
430
views
1
answer
3
votes
1
answer
465
views
1
answer
5
votes
1
answer
408
views
1
answer
Testing three-way interactions in DESeq2
rnaseq deseq2 interactions rna-seq written 14 months ago by red_bricks20 • updated 14 months ago by Michael Love20k
8
votes
1
answer
365
views
1
answer
7
votes
1
answer
116
views
1
answer
3
votes
1
answer
2.8k
views
1
answer
Find DEG from RNA-seq: What if have only RPKM data?
rpkm rna-seq deg written 3.8 years ago by Yue Zhao0 • updated 3.8 years ago by b.nota300
3
votes
1
answer
1.5k
views
1
answer
edgeR glmLRT and interaction effect: an example
edger interactions rna-seq glmlrt written 2.7 years ago by David Rengel70 • updated 2.7 years ago by Gordon Smyth35k
5
votes
2
answers
584
views
2
answers
Co-expression between host and pathogen genes
edger rna-seq written 2.7 years ago by jhj8910 • updated 2.7 years ago by Aaron Lun21k
9
votes
2
answers
2.7k
views
2
answers
0
votes
1
answer
496
views
1
answer
8
votes
2
answers
1.1k
views
2
answers
How does edgeR compare to lme4?
edger rna-seq lme4 mixed model random effects written 2.5 years ago by Ekarl230 • updated 2.5 years ago by Gordon Smyth35k
1
vote
0
answers
562
views
0
answers
5
votes
2
answers
2.4k
views
2
answers
Pre-processing of RNA-Seq data for WGCNA and DGE
deseq2 wgcna voom rna-seq removebatcheffect() written 2.2 years ago by gokce.ouz40 • updated 2.2 years ago by Peter Langfelder1.6k
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