12
votes
2
answers
3.6k
views
5 follow
2
answers
10
votes
2
answers
680
views
5 follow
2
answers
Filtering lowly expressed genes in voom-limma analysis
limma voom differential gene expression rna-seq written 16 months ago by rubi70 • updated 16 months ago by Gordon Smyth32k
1
vote
1
answer
374
views
5 follow
1
answer
18
votes
2
answers
1.1k
views
2
answers
7
votes
2
answers
827
views
2
answers
1
vote
3
answers
349
views
3
answers
Gene Ontology and Gene Set Enrichment
go gene ontology bioinformatics rna-seq gene set enrichment written 13 months ago by fromhj30410 • updated 13 months ago by Guangchuang Yu800
1
vote
1
answer
298
views
1
answer
3
votes
1
answer
239
views
1
answer
4
votes
1
answer
120
views
1
answer
Testing three-way interactions in DESeq2
rnaseq deseq2 interactions rna-seq written 5 weeks ago by red_bricks10 • updated 5 weeks ago by Michael Love15k
2
votes
3
answers
3.1k
views
3
answers
3
votes
1
answer
1.9k
views
1
answer
Find DEG from RNA-seq: What if have only RPKM data?
rpkm rna-seq deg written 2.7 years ago by Yue Zhao0 • updated 2.7 years ago by b.nota290
2
votes
1
answer
1.8k
views
1
answer
interpreting LRT results DESeq2
deseq2 rna-seq lrt written 2.6 years ago by solgakar@bi.technion.ac.il50 • updated 2.6 years ago by Michael Love15k
6
votes
2
answers
1.9k
views
2
answers
Multi factor design edgeR/Deseq2
edger deseq2 rna-seq written 2.4 years ago by gthm0 • updated 2.4 years ago by Gordon Smyth32k
2
votes
0
answers
1.0k
views
0
answers
3
votes
1
answer
765
views
1
answer
edgeR glmLRT and interaction effect: an example
edger interactions rna-seq glmlrt written 20 months ago by David Rengel70 • updated 20 months ago by Gordon Smyth32k
5
votes
2
answers
441
views
2
answers
Co-expression between host and pathogen genes
edger rna-seq written 19 months ago by jhj8910 • updated 19 months ago by Aaron Lun17k
0
votes
1
answer
300
views
1
answer
8
votes
2
answers
556
views
2
answers
How does edgeR compare to lme4?
edger rna-seq lme4 mixed model random effects written 17 months ago by Ekarl210 • updated 17 months ago by Gordon Smyth32k
2
votes
1
answer
348
views
1
answer
adjusted p-values and p-values problems!
R rna-seq adjusted pvalue pvalue bonferroni written 13 months ago by fromhj30410 • updated 13 months ago by Michael Love15k
4
votes
1
answer
281
views
1
answer
RNA-seq analysis edgeR
edger rna-seq written 12 months ago by es87410 • updated 12 months ago by Ryan C. Thompson6.1k
3
votes
2
answers
364
views
2
answers
DESeq2 with contaminating cell types
deseq2 rna-seq written 10 months ago by hughes.drew80 • updated 10 months ago by Michael Love15k
1
vote
1
answer
201
views
1
answer
RNA-Seq comparisons of various sample
rna-seq written 9 months ago by minie0 • updated 9 months ago by Aaron Lun17k
3
votes
1
answer
250
views
1
answer
Question regarding best bioconductor package for RNA-seq
rna-seq packages written 8 months ago by Maximilian10 • updated 8 months ago by b.nota290
6
votes
1
answer
380
views
1
answer
Dealing with (blood) contamination in RNA-seq data
rnaseq limma linear model rna-seq written 8 months ago by Thomas Sandmann60 • updated 8 months ago by Aaron Lun17k
5
votes
1
answer
218
views
1
answer
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