12
votes
2
answers
3.7k
views
5 follow
2
answers
1
vote
5
answers
3.3k
views
5
answers
2
votes
3
answers
3.1k
views
3
answers
3
votes
1
answer
1.9k
views
1
answer
Find DEG from RNA-seq: What if have only RPKM data?
rpkm rna-seq deg written 2.7 years ago by Yue Zhao0 • updated 2.7 years ago by b.nota290
6
votes
2
answers
1.9k
views
2
answers
Multi factor design edgeR/Deseq2
edger deseq2 rna-seq written 2.4 years ago by gthm0 • updated 2.4 years ago by Gordon Smyth32k
2
votes
1
answer
1.9k
views
1
answer
interpreting LRT results DESeq2
deseq2 rna-seq lrt written 2.7 years ago by solgakar@bi.technion.ac.il50 • updated 2.7 years ago by Michael Love15k
1
vote
1
answer
1.7k
views
1
answer
WGCNA - signedKME function
wgcna rna-seq signedkme written 2.9 years ago by vieuphoria10 • updated 2.9 years ago by Peter Langfelder1.3k
1
vote
2
answers
1.6k
views
2
answers
8
votes
2
answers
1.4k
views
2
answers
3
votes
2
answers
1.4k
views
2
answers
edgeR: Error in taglist[[i]] : subscript out of bounds
edger rna-seq written 2.4 years ago by Nick N60 • updated 2.4 years ago by Gordon Smyth32k
2
votes
2
answers
1.3k
views
2
answers
Hisat2 vs featureCounts summary statistics
featurecounts rna-seq mapping hisat2 written 19 months ago by Koen Van den Berge90 • updated 18 months ago by Wei Shi2.7k
9
votes
1
answer
1.1k
views
1
answer
limma Time Course Experiment with many time points
limma rna-seq written 2.1 years ago by arfranco120 • updated 2.1 years ago by Aaron Lun17k
18
votes
2
answers
1.1k
views
2
answers
1
vote
1
answer
1.0k
views
1
answer
2
votes
1
answer
1.0k
views
1
answer
RNA-Seq analysis edgeR
edger rna-seq replicates written 2.8 years ago by eb09060 • updated 2.8 years ago by James W. MacDonald45k
2
votes
0
answers
1.0k
views
0
answers
30
votes
2
answers
983
views
2
answers
0
votes
2
answers
941
views
2
answers
3
votes
2
answers
941
views
2
answers
Pre-processing of RNA-Seq data for WGCNA and DGE
deseq2 wgcna voom rna-seq removebatcheffect() written 14 months ago by gokce.ouz20 • updated 14 months ago by Peter Langfelder1.3k
0
votes
2
answers
914
views
2
answers
PlotMA Filters for DeSEQ2 ; adjusting script
rnaseq deseq deseq2 rna-seq plotma written 20 months ago by sjs02820 • updated 20 months ago by Michael Love15k
0
votes
2
answers
832
views
2
answers
7
votes
2
answers
830
views
2
answers
1
vote
1
answer
802
views
1
answer
Deconvolution RNA-Seq data
differential expression rna-seq written 2.7 years ago by carleshf10 • updated 2.7 years ago by James W. MacDonald45k
1
vote
3
answers
797
views
3
answers
strange FDR distribution for RNA-seq sample with edgeR
edger rna-seq fdr written 2.9 years ago by OLIVER, DAVID10 • updated 2.9 years ago by Gordon Smyth32k
3
votes
1
answer
769
views
1
answer
edgeR glmLRT and interaction effect: an example
edger interactions rna-seq glmlrt written 20 months ago by David Rengel70 • updated 20 months ago by Gordon Smyth32k
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