12
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2
answers
5.5k
views
5 follow
2
answers
1
vote
5
answers
4.7k
views
5
answers
4
votes
3
answers
4.3k
views
3
answers
4
votes
1
answer
2.6k
views
5 follow
1
answer
interpreting LRT results DESeq2
deseq2 rna-seq lrt written 3.2 years ago by solgakar@bi.technion.ac.il60 • updated 3.2 years ago by Michael Love18k
7
votes
2
answers
2.5k
views
5 follow
2
answers
Multi factor design edgeR/Deseq2
edger deseq2 rna-seq written 3.0 years ago by gthm20 • updated 2.9 years ago by Gordon Smyth33k
3
votes
1
answer
2.4k
views
1
answer
Find DEG from RNA-seq: What if have only RPKM data?
rpkm rna-seq deg written 3.3 years ago by Yue Zhao0 • updated 3.3 years ago by b.nota290
9
votes
2
answers
2.1k
views
2
answers
40
votes
3
answers
2.0k
views
3
answers
1
vote
1
answer
2.0k
views
1
answer
WGCNA - signedKME function
wgcna rna-seq signedkme written 3.5 years ago by vieuphoria10 • updated 3.5 years ago by Peter Langfelder1.5k
1
vote
2
answers
1.8k
views
2
answers
2
votes
2
answers
1.8k
views
2
answers
Hisat2 vs featureCounts summary statistics
featurecounts rna-seq mapping hisat2 written 2.1 years ago by Koen Van den Berge90 • updated 2.1 years ago by Wei Shi2.8k
3
votes
2
answers
1.7k
views
2
answers
edgeR: Error in taglist[[i]] : subscript out of bounds
edger rna-seq written 3.0 years ago by Nick N60 • updated 3.0 years ago by Gordon Smyth33k
3
votes
3
answers
1.6k
views
5 follow
3
answers
What does this error mean? - issue implementing SVA
sva rna-seq written 2.4 years ago by kmuench30 • updated 11 weeks ago by Sandip Darji0
4
votes
2
answers
1.5k
views
2
answers
Pre-processing of RNA-Seq data for WGCNA and DGE
deseq2 wgcna voom rna-seq removebatcheffect() written 21 months ago by gokce.ouz30 • updated 21 months ago by Peter Langfelder1.5k
1
vote
1
answer
1.5k
views
1
answer
7
votes
2
answers
1.5k
views
2
answers
9
votes
1
answer
1.5k
views
1
answer
limma Time Course Experiment with many time points
limma rna-seq written 2.7 years ago by arfranco120 • updated 2.7 years ago by Aaron Lun19k
0
votes
2
answers
1.5k
views
2
answers
PlotMA Filters for DeSEQ2 ; adjusting script
rnaseq deseq deseq2 rna-seq plotma written 2.2 years ago by sjs02820 • updated 2.2 years ago by Michael Love18k
18
votes
2
answers
1.3k
views
2
answers
3
votes
1
answer
1.2k
views
1
answer
edgeR glmLRT and interaction effect: an example
edger interactions rna-seq glmlrt written 2.2 years ago by David Rengel70 • updated 2.2 years ago by Gordon Smyth33k
2
votes
1
answer
1.2k
views
1
answer
RNA-Seq analysis edgeR
edger rna-seq replicates written 3.4 years ago by eb09060 • updated 3.4 years ago by James W. MacDonald46k
0
votes
2
answers
1.2k
views
2
answers
1
vote
1
answer
1.1k
views
1
answer
Deconvolution RNA-Seq data
differential expression rna-seq written 3.3 years ago by carleshf10 • updated 3.3 years ago by James W. MacDonald46k
0
votes
2
answers
1.1k
views
2
answers
10
votes
2
answers
1.0k
views
5 follow
2
answers
Filtering lowly expressed genes in voom-limma analysis
limma voom differential gene expression rna-seq written 23 months ago by rubi90 • updated 23 months ago by Gordon Smyth33k
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