12
votes
2
answers
4.4k
views
5 follow
2
answers
1
vote
5
answers
3.9k
views
5
answers
3
votes
3
answers
3.5k
views
3
answers
4
votes
1
answer
2.1k
views
5 follow
1
answer
interpreting LRT results DESeq2
deseq2 rna-seq lrt written 2.9 years ago by solgakar@bi.technion.ac.il60 • updated 2.9 years ago by Michael Love16k
3
votes
1
answer
2.1k
views
1
answer
Find DEG from RNA-seq: What if have only RPKM data?
rpkm rna-seq deg written 2.9 years ago by Yue Zhao0 • updated 2.9 years ago by b.nota290
6
votes
2
answers
2.0k
views
2
answers
Multi factor design edgeR/Deseq2
edger deseq2 rna-seq written 2.6 years ago by gthm10 • updated 2.6 years ago by Gordon Smyth32k
1
vote
1
answer
1.8k
views
1
answer
WGCNA - signedKME function
wgcna rna-seq signedkme written 3.1 years ago by vieuphoria10 • updated 3.1 years ago by Peter Langfelder1.4k
1
vote
2
answers
1.7k
views
2
answers
9
votes
2
answers
1.6k
views
2
answers
3
votes
2
answers
1.5k
views
2
answers
edgeR: Error in taglist[[i]] : subscript out of bounds
edger rna-seq written 2.6 years ago by Nick N60 • updated 2.6 years ago by Gordon Smyth32k
2
votes
2
answers
1.4k
views
2
answers
Hisat2 vs featureCounts summary statistics
featurecounts rna-seq mapping hisat2 written 21 months ago by Koen Van den Berge90 • updated 21 months ago by Wei Shi2.7k
40
votes
3
answers
1.4k
views
3
answers
9
votes
1
answer
1.2k
views
1
answer
limma Time Course Experiment with many time points
limma rna-seq written 2.3 years ago by arfranco120 • updated 2.3 years ago by Aaron Lun18k
1
vote
1
answer
1.2k
views
1
answer
18
votes
2
answers
1.2k
views
2
answers
2
votes
0
answers
1.2k
views
0
answers
3
votes
2
answers
1.1k
views
2
answers
Pre-processing of RNA-Seq data for WGCNA and DGE
deseq2 wgcna voom rna-seq removebatcheffect() written 17 months ago by gokce.ouz30 • updated 17 months ago by Peter Langfelder1.4k
2
votes
1
answer
1.1k
views
1
answer
RNA-Seq analysis edgeR
edger rna-seq replicates written 3.0 years ago by eb09060 • updated 3.0 years ago by James W. MacDonald45k
0
votes
2
answers
1.1k
views
2
answers
PlotMA Filters for DeSEQ2 ; adjusting script
rnaseq deseq deseq2 rna-seq plotma written 23 months ago by sjs02820 • updated 23 months ago by Michael Love16k
0
votes
2
answers
1.0k
views
2
answers
7
votes
2
answers
1.0k
views
2
answers
3
votes
1
answer
939
views
1
answer
edgeR glmLRT and interaction effect: an example
edger interactions rna-seq glmlrt written 23 months ago by David Rengel70 • updated 22 months ago by Gordon Smyth32k
0
votes
2
answers
908
views
2
answers
1
vote
1
answer
895
views
1
answer
Deconvolution RNA-Seq data
differential expression rna-seq written 3.0 years ago by carleshf10 • updated 3.0 years ago by James W. MacDonald45k
1
vote
3
answers
869
views
3
answers
strange FDR distribution for RNA-seq sample with edgeR
edger rna-seq fdr written 3.2 years ago by OLIVER, DAVID10 • updated 3.2 years ago by Gordon Smyth32k
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