9
votes
1
answer
10.0k
views
1
answer
RPKM, CPM and TMM
rnaseq edger differential expression written 2.4 years ago by Pauly Lin60 • updated 2.4 years ago by Aaron Lun17k
20
votes
2
answers
7.4k
views
5 follow
2
answers
1
vote
2
answers
6.6k
views
2
answers
how to calculate gene length to be used in rpkm() in edgeR
rnaseq edger rpkm written 3.6 years ago by shirley zhang1.0k • updated 3.1 years ago by Gordon Smyth32k
0
votes
1
answer
5.0k
views
1
answer
3D PCA Plot of RNA-seq Data using plotPCA from within DESeq2
rnaseq deseq2 pca written 2.6 years ago by erin.gill8130 • updated 2.6 years ago by Michael Love15k
6
votes
3
answers
4.8k
views
3
answers
1
vote
2
answers
4.3k
views
2
answers
Integrating DESeq2 and TopGO for Enrichment
rnaseq go deseq2 R written 2.8 years ago by nw3280 • updated 2.8 years ago by Bernd Klaus470
8
votes
3
answers
4.3k
views
7 follow
3
answers
Batch correction in DESeq2
rnaseq deseq2 combat removebatcheffect() batch effect written 23 months ago by AB0 • updated 17 months ago by adam0
3
votes
1
answer
3.6k
views
1
answer
Deseq2: RNA-seq and Negative binomial distribution
rnaseq deseq2 written 2.0 years ago by tony_cybercloud0 • updated 2.0 years ago by Michael Love15k
3
votes
2
answers
3.6k
views
2
answers
1
vote
1
answer
3.5k
views
1
answer
Undertanding how DESeq2 handles multiple test conditions
rnaseq deseq2 R written 2.8 years ago by nw3280 • updated 2.8 years ago by Ryan C. Thompson6.1k
2
votes
2
answers
3.5k
views
2
answers
3
votes
2
answers
3.5k
views
2
answers
Remove batch effect in small RNASeq study (SVA or others?)
rnaseq alignment edger sva written 3.6 years ago by shirley zhang1.0k • updated 2.8 years ago by Gordon Smyth32k
3
votes
1
answer
3.3k
views
1
answer
Ballgown vs (voom,edgeR,DESeq,limma)
rnaseq limma differential expression voom written 2.9 years ago by François Lefebvre40 • updated 2.8 years ago by Alyssa Frazee110
3
votes
2
answers
3.1k
views
2
answers
limma voom accessing normalised counts tables
geneexpression rnaseq limma voom counts written 3.1 years ago by Peter Crisp10 • updated 3.1 years ago by Steve Lianoglou12k
1
vote
1
answer
3.1k
views
1
answer
2
votes
1
answer
3.0k
views
1
answer
Estimation of dispersion in DeSeq and DeSeq2
rnaseq deseq deseq2 written 3.0 years ago by JK10 • updated 3.0 years ago by Michael Love15k
11
votes
2
answers
2.8k
views
2
answers
gene dispersion, what does it mean?
rnaseq gener written 24 months ago by tonja.r40 • updated 24 months ago by Gordon Smyth32k
18
votes
2
answers
2.6k
views
6 follow
2
answers
Usability of ERCC spike-ins in standard RNAseq experiments
rnaseq deseq2 ercc written 13 months ago by mbeckste20 • updated 13 months ago by Simon Anders3.4k
7
votes
2
answers
2.5k
views
2
answers
2
votes
1
answer
2.4k
views
1
answer
DEseq2 - Use normalized DEseq2 counts to plot most expressed genes per group
rnaseq deseq2 R written 22 months ago by Bstn1320 • updated 22 months ago by Michael Love15k
0
votes
2
answers
2.4k
views
2
answers
9
votes
0
answers
2.3k
views
5 follow
0
answers
5
votes
7
answers
2.3k
views
7
answers
0
votes
1
answer
2.3k
views
1
answer
DESeq2 - input data questions
rnaseq edger deseq deseq2 written 3.8 years ago by Ming Yi340 • updated 3.8 years ago by Michael Love15k
2
votes
1
answer
2.2k
views
1
answer
readGappedAlignments not working in Rsamtools
rnaseq written 3.4 years ago by Guest User12k • updated 3.4 years ago by Valerie Obenchain ♦♦ 6.4k
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