10
votes
1
answer
11k
views
1
answer
RPKM, CPM and TMM
rnaseq edger differential expression written 2.7 years ago by Pauly Lin80 • updated 2.7 years ago by Aaron Lun18k
20
votes
2
answers
8.0k
views
5 follow
2
answers
3
votes
2
answers
7.3k
views
2
answers
how to calculate gene length to be used in rpkm() in edgeR
rnaseq edger rpkm written 3.8 years ago by shirley zhang1.0k • updated 3.3 years ago by Gordon Smyth32k
6
votes
3
answers
5.8k
views
3
answers
10
votes
3
answers
5.5k
views
7 follow
3
answers
Batch correction in DESeq2
rnaseq deseq2 combat removebatcheffect() batch effect written 2.2 years ago by AB0 • updated 21 months ago by adam0
0
votes
1
answer
5.4k
views
1
answer
3D PCA Plot of RNA-seq Data using plotPCA from within DESeq2
rnaseq deseq2 pca written 2.9 years ago by erin.gill8130 • updated 2.9 years ago by Michael Love16k
1
vote
2
answers
5.0k
views
2
answers
Integrating DESeq2 and TopGO for Enrichment
rnaseq go deseq2 R written 3.0 years ago by nw3280 • updated 3.0 years ago by Bernd Klaus480
3
votes
1
answer
4.2k
views
1
answer
Deseq2: RNA-seq and Negative binomial distribution
rnaseq deseq2 written 2.3 years ago by tony_cybercloud0 • updated 2.3 years ago by Michael Love16k
1
vote
1
answer
4.1k
views
1
answer
Undertanding how DESeq2 handles multiple test conditions
rnaseq deseq2 R written 3.0 years ago by nw3280 • updated 3.0 years ago by Ryan C. Thompson6.3k
3
votes
2
answers
4.1k
views
2
answers
2
votes
2
answers
4.0k
views
2
answers
3
votes
2
answers
3.7k
views
2
answers
Remove batch effect in small RNASeq study (SVA or others?)
rnaseq alignment edger sva written 3.8 years ago by shirley zhang1.0k • updated 3.1 years ago by Gordon Smyth32k
3
votes
1
answer
3.6k
views
1
answer
Ballgown vs (voom,edgeR,DESeq,limma)
rnaseq limma differential expression voom written 3.1 years ago by François Lefebvre40 • updated 3.1 years ago by Alyssa Frazee150
11
votes
2
answers
3.6k
views
2
answers
gene dispersion, what does it mean?
rnaseq gener written 2.2 years ago by tonja.r40 • updated 2.2 years ago by Gordon Smyth32k
3
votes
2
answers
3.4k
views
2
answers
limma voom accessing normalised counts tables
geneexpression rnaseq limma voom counts written 3.3 years ago by Peter Crisp10 • updated 3.3 years ago by Steve Lianoglou12k
2
votes
1
answer
3.4k
views
1
answer
Estimation of dispersion in DeSeq and DeSeq2
rnaseq deseq deseq2 written 3.2 years ago by JK10 • updated 3.2 years ago by Michael Love16k
1
vote
1
answer
3.3k
views
1
answer
2
votes
1
answer
3.1k
views
1
answer
DEseq2 - Use normalized DEseq2 counts to plot most expressed genes per group
rnaseq deseq2 R written 2.1 years ago by Bstn1320 • updated 2.1 years ago by Michael Love16k
18
votes
2
answers
2.9k
views
6 follow
2
answers
Usability of ERCC spike-ins in standard RNAseq experiments
rnaseq deseq2 ercc written 16 months ago by mbeckste20 • updated 16 months ago by Simon Anders3.4k
0
votes
1
answer
2.8k
views
1
answer
Deseq2 for RNAseq experiments without replicates
rnaseq deseq2 written 2.1 years ago by prp2910 • updated 2.1 years ago by Michael Love16k
7
votes
2
answers
2.8k
views
2
answers
9
votes
0
answers
2.5k
views
5 follow
0
answers
5
votes
7
answers
2.5k
views
7
answers
0
votes
2
answers
2.5k
views
2
answers
0
votes
3
answers
2.5k
views
3
answers
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