9
votes
0
answers
2.5k
views
5 follow
0
answers
6
votes
0
answers
1.7k
views
0
answers
10
votes
1
answer
1.8k
views
5 follow
1
answer
Bootstrap confidence intervals on RNA-seq expression from Kallisto
rnaseq limma edger deseq2 voom written 2.7 years ago by Sean Davis21k • updated 5 months ago by Paul Harrison60
4
votes
0
answers
1.7k
views
6 follow
0
answers
11
votes
4
answers
883
views
6 follow
4
answers
16
votes
1
answer
2.1k
views
1
answer
11
votes
1
answer
456
views
7 follow
1
answer
How to remove more than two batches in my data-sets
rnaseq limma removebatcheffect() written 19 months ago by yi.huang30 • updated 19 months ago by Gordon Smyth32k
12
votes
2
answers
2.3k
views
2
answers
How to map all Ensembl IDs to Gene Symbols- Problem with AnootationDbi
rnaseq annotationdbi written 17 months ago by gokce.ouz30 • updated 16 months ago by Valerie Obenchain ♦♦ 6.4k
7
votes
1
answer
592
views
6 follow
1
answer
5
votes
1
answer
986
views
9 follow
1
answer
20
votes
2
answers
8.0k
views
5 follow
2
answers
4
votes
1
answer
484
views
1
answer
stacking (partially or completely overlapping) GRanges/IRanges
rnaseq iranges granges written 3.1 years ago by Johannes Rainer1.2k • updated 3.1 years ago by Martin Morgan ♦♦ 21k
2
votes
2
answers
1.1k
views
2
answers
12
votes
3
answers
830
views
5 follow
3
answers
4
votes
1
answer
1.0k
views
1
answer
18
votes
2
answers
2.9k
views
6 follow
2
answers
Usability of ERCC spike-ins in standard RNAseq experiments
rnaseq deseq2 ercc written 16 months ago by mbeckste20 • updated 16 months ago by Simon Anders3.4k
5
votes
1
answer
1.1k
views
1
answer
What problem does the MA plot diagnose? And how do you solve it?
rnaseq deseq deseq2 written 12 months ago by ysdel30 • updated 12 months ago by Ryan C. Thompson6.3k
5
votes
1
answer
168
views
1
answer
Testing three-way interactions in DESeq2
rnaseq deseq2 interactions rna-seq written 4 months ago by red_bricks20 • updated 4 months ago by Michael Love16k
2
votes
0
answers
190
views
5 follow
0
answers
3
votes
1
answer
1.3k
views
1
answer
Nanostring ncounterdata - DESeq
rnaseq normalization preprocessing deseq written 6.6 years ago by Vanessa Vermeirssen20 • updated 6.6 years ago by Simon Anders3.4k
2
votes
2
answers
1.4k
views
2
answers
1
vote
5
answers
1.9k
views
5
answers
EdgeR: replicated pools, yes or not?
rnaseq microarray edger written 3.8 years ago by Guest User12k • updated 3.8 years ago by Ryan C. Thompson6.3k
1
vote
1
answer
1.0k
views
5 follow
1
answer
edgeR - paired samples with multifactorial design - errors
rnaseq written 3.8 years ago by Guest User12k • updated 3.8 years ago by Devon Ryan200
3
votes
2
answers
3.7k
views
2
answers
Remove batch effect in small RNASeq study (SVA or others?)
rnaseq alignment edger sva written 3.8 years ago by shirley zhang1.0k • updated 3.1 years ago by Gordon Smyth32k
2
votes
1
answer
2.4k
views
1
answer
readGappedAlignments not working in Rsamtools
rnaseq written 3.7 years ago by Guest User12k • updated 3.7 years ago by Valerie Obenchain ♦♦ 6.4k
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