9
votes
0
answers
3.0k
views
5 follow
0
answers
6
votes
0
answers
2.0k
views
0
answers
10
votes
1
answer
2.2k
views
5 follow
1
answer
Bootstrap confidence intervals on RNA-seq expression from Kallisto
rnaseq limma edger deseq2 voom written 3.5 years ago by Sean Davis21k • updated 15 months ago by Paul Harrison60
7
votes
1
answer
2.4k
views
14 follow
1
answer
4
votes
0
answers
2.1k
views
6 follow
0
answers
11
votes
4
answers
1.4k
views
6 follow
4
answers
18
votes
2
answers
4.4k
views
6 follow
2
answers
11
votes
1
answer
636
views
7 follow
1
answer
How to remove more than two batches in my data-sets
rnaseq limma removebatcheffect() written 2.4 years ago by yi.huang30 • updated 2.4 years ago by Gordon Smyth35k
12
votes
2
answers
6.4k
views
2
answers
How to map all Ensembl IDs to Gene Symbols- Problem with AnootationDbi
rnaseq annotationdbi written 2.2 years ago by gokce.ouz40 • updated 2.2 years ago by Valerie Obenchain ♦♦ 6.7k
7
votes
1
answer
1.0k
views
6 follow
1
answer
7
votes
2
answers
170
views
2
answers
Dispersion fit and p-value distributions
rnaseq deseq2 fdrtool written 8 weeks ago by C T90 • updated 8 weeks ago by Ryan C. Thompson7.1k
20
votes
2
answers
10k
views
5 follow
2
answers
5
votes
1
answer
4.8k
views
5 follow
1
answer
Ballgown vs (voom,edgeR,DESeq,limma)
rnaseq limma differential expression voom written 3.9 years ago by Fran├žois Lefebvre50 • updated 3.9 years ago by Alyssa Frazee200
4
votes
1
answer
596
views
1
answer
stacking (partially or completely overlapping) GRanges/IRanges
rnaseq iranges granges written 3.9 years ago by Johannes Rainer1.3k • updated 3.9 years ago by Martin Morgan ♦♦ 22k
2
votes
2
answers
1.6k
views
2
answers
12
votes
3
answers
1.2k
views
5 follow
3
answers
12
votes
3
answers
10k
views
9 follow
3
answers
Batch correction in DESeq2
rnaseq deseq2 combat removebatcheffect() batch effect written 3.0 years ago by AB30 • updated 2.5 years ago by adam0
4
votes
1
answer
1.6k
views
1
answer
3
votes
1
answer
838
views
1
answer
19
votes
2
answers
4.4k
views
7 follow
2
answers
Usability of ERCC spike-ins in standard RNAseq experiments
rnaseq deseq2 ercc written 2.2 years ago by mbeckste20 • updated 2.2 years ago by Simon Anders3.5k
4
votes
1
answer
2.4k
views
1
answer
ComBat to remove batch effects from RNA Seq data
rnaseq combat written 2.2 years ago by kerrypop20 • updated 2.2 years ago by polemiraza60
5
votes
1
answer
2.7k
views
1
answer
What problem does the MA plot diagnose? And how do you solve it?
rnaseq deseq deseq2 written 21 months ago by ysdel30 • updated 21 months ago by Ryan C. Thompson7.1k
5
votes
1
answer
620
views
1
answer
5
votes
1
answer
416
views
1
answer
Testing three-way interactions in DESeq2
rnaseq deseq2 interactions rna-seq written 14 months ago by red_bricks20 • updated 14 months ago by Michael Love20k
2
votes
0
answers
449
views
5 follow
0
answers
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