9
votes
0
answers
2.9k
views
5 follow
0
answers
6
votes
0
answers
1.9k
views
0
answers
10
votes
1
answer
2.1k
views
5 follow
1
answer
Bootstrap confidence intervals on RNA-seq expression from Kallisto
rnaseq limma edger deseq2 voom written 3.3 years ago by Sean Davis21k • updated 12 months ago by Paul Harrison60
4
votes
0
answers
2.0k
views
6 follow
0
answers
11
votes
4
answers
1.2k
views
6 follow
4
answers
18
votes
2
answers
3.6k
views
6 follow
2
answers
11
votes
1
answer
555
views
7 follow
1
answer
How to remove more than two batches in my data-sets
rnaseq limma removebatcheffect() written 2.2 years ago by yi.huang30 • updated 2.2 years ago by Gordon Smyth35k
12
votes
2
answers
4.9k
views
2
answers
How to map all Ensembl IDs to Gene Symbols- Problem with AnootationDbi
rnaseq annotationdbi written 24 months ago by gokce.ouz30 • updated 23 months ago by Valerie Obenchain ♦♦ 6.6k
7
votes
1
answer
900
views
6 follow
1
answer
5
votes
1
answer
1.9k
views
9 follow
1
answer
20
votes
2
answers
9.7k
views
5 follow
2
answers
5
votes
1
answer
4.5k
views
5 follow
1
answer
Ballgown vs (voom,edgeR,DESeq,limma)
rnaseq limma differential expression voom written 3.7 years ago by Fran├žois Lefebvre50 • updated 3.7 years ago by Alyssa Frazee200
4
votes
1
answer
549
views
1
answer
stacking (partially or completely overlapping) GRanges/IRanges
rnaseq iranges granges written 3.6 years ago by Johannes Rainer1.3k • updated 3.6 years ago by Martin Morgan ♦♦ 22k
2
votes
2
answers
1.4k
views
2
answers
12
votes
3
answers
1.1k
views
5 follow
3
answers
4
votes
1
answer
1.4k
views
1
answer
3
votes
1
answer
654
views
1
answer
19
votes
2
answers
3.9k
views
7 follow
2
answers
Usability of ERCC spike-ins in standard RNAseq experiments
rnaseq deseq2 ercc written 23 months ago by mbeckste20 • updated 23 months ago by Simon Anders3.5k
5
votes
1
answer
2.2k
views
1
answer
What problem does the MA plot diagnose? And how do you solve it?
rnaseq deseq deseq2 written 19 months ago by ysdel30 • updated 19 months ago by Ryan C. Thompson6.8k
5
votes
1
answer
334
views
1
answer
Testing three-way interactions in DESeq2
rnaseq deseq2 interactions rna-seq written 11 months ago by red_bricks20 • updated 11 months ago by Michael Love19k
2
votes
0
answers
374
views
5 follow
0
answers
8
votes
1
answer
61
views
1
answer
3
votes
1
answer
1.6k
views
1
answer
Nanostring ncounterdata - DESeq
rnaseq normalization preprocessing deseq written 7.2 years ago by Vanessa Vermeirssen20 • updated 7.2 years ago by Simon Anders3.5k
2
votes
2
answers
1.8k
views
2
answers
1
vote
5
answers
2.2k
views
5
answers
EdgeR: replicated pools, yes or not?
rnaseq microarray edger written 4.4 years ago by Guest User12k • updated 4.4 years ago by Ryan C. Thompson6.8k
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