9
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0
answers
2.7k
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5 follow
0
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6
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0
answers
1.8k
views
0
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10
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1
answer
2.0k
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5 follow
1
answer
Bootstrap confidence intervals on RNA-seq expression from Kallisto
rnaseq limma edger deseq2 voom written 3.0 years ago by Sean Davis21k • updated 9 months ago by Paul Harrison60
4
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0
answers
1.9k
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6 follow
0
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11
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4
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1.1k
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4
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18
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2
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2.9k
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6 follow
2
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11
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1
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518
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7 follow
1
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How to remove more than two batches in my data-sets
rnaseq limma removebatcheffect() written 23 months ago by yi.huang30 • updated 23 months ago by Gordon Smyth33k
12
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2
answers
3.8k
views
2
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How to map all Ensembl IDs to Gene Symbols- Problem with AnootationDbi
rnaseq annotationdbi written 21 months ago by gokce.ouz30 • updated 20 months ago by Valerie Obenchain ♦♦ 6.5k
7
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1
answer
786
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6 follow
1
answer
5
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1
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1.5k
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9 follow
1
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20
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2
answers
9.0k
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5 follow
2
answers
5
votes
1
answer
4.2k
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5 follow
1
answer
Ballgown vs (voom,edgeR,DESeq,limma)
rnaseq limma differential expression voom written 3.4 years ago by Fran├žois Lefebvre50 • updated 3.4 years ago by Alyssa Frazee170
4
votes
1
answer
515
views
1
answer
stacking (partially or completely overlapping) GRanges/IRanges
rnaseq iranges granges written 3.4 years ago by Johannes Rainer1.3k • updated 3.4 years ago by Martin Morgan ♦♦ 21k
2
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2
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1.3k
views
2
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12
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3
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1.0k
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5 follow
3
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4
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1
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1.3k
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1
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3
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1
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519
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1
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19
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2
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3.4k
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7 follow
2
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Usability of ERCC spike-ins in standard RNAseq experiments
rnaseq deseq2 ercc written 20 months ago by mbeckste20 • updated 20 months ago by Simon Anders3.5k
5
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1
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1.8k
views
1
answer
What problem does the MA plot diagnose? And how do you solve it?
rnaseq deseq deseq2 written 16 months ago by ysdel30 • updated 16 months ago by Ryan C. Thompson6.8k
5
votes
1
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244
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1
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Testing three-way interactions in DESeq2
rnaseq deseq2 interactions rna-seq written 8 months ago by red_bricks20 • updated 8 months ago by Michael Love18k
2
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0
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313
views
5 follow
0
answers
3
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1
answer
1.5k
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1
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Nanostring ncounterdata - DESeq
rnaseq normalization preprocessing deseq written 6.9 years ago by Vanessa Vermeirssen20 • updated 6.9 years ago by Simon Anders3.5k
2
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2
answers
1.6k
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2
answers
1
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5
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2.1k
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5
answers
EdgeR: replicated pools, yes or not?
rnaseq microarray edger written 4.2 years ago by Guest User12k • updated 4.2 years ago by Ryan C. Thompson6.8k
1
vote
1
answer
1.1k
views
5 follow
1
answer
edgeR - paired samples with multifactorial design - errors
rnaseq written 4.2 years ago by Guest User12k • updated 4.2 years ago by Devon Ryan200
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