Showing: rnaseqreset
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Batch correction in DESeq2
rnaseq deseq2 combat removebatcheffect() batch effect written 3.9 years ago by AB70 • updated 3.4 years ago by adam0
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Bootstrap confidence intervals on RNA-seq expression from Kallisto
rnaseq limma edger deseq2 voom written 4.4 years ago by Sean Davis21k • updated 2.1 years ago by Paul Harrison70
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How to remove more than two batches in my data-sets
rnaseq limma removebatcheffect() written 3.3 years ago by yi.huang30 • updated 3.3 years ago by Gordon Smyth39k
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Dispersion fit and p-value distributions
rnaseq deseq2 fdrtool written 13 months ago by C T90 • updated 12 months ago by Ryan C. Thompson7.4k
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Ballgown vs (voom,edgeR,DESeq,limma)
rnaseq limma differential expression voom written 4.8 years ago by François Lefebvre50 • updated 4.8 years ago by Alyssa Frazee210
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stacking (partially or completely overlapping) GRanges/IRanges
rnaseq iranges granges written 4.8 years ago by Johannes Rainer1.5k • updated 4.8 years ago by Martin Morgan ♦♦ 24k
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RPKM, CPM and TMM
rnaseq edger differential expression written 4.4 years ago by Pauly Lin110 • updated 4.4 years ago by Aaron Lun25k
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Deseq2: RNA-seq and Negative binomial distribution
rnaseq deseq2 written 4.0 years ago by tony_cybercloud20 • updated 4.0 years ago by Michael Love26k
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Usability of ERCC spike-ins in standard RNAseq experiments
rnaseq deseq2 ercc written 3.1 years ago by mbeckste20 • updated 3.1 years ago by Simon Anders3.6k
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ComBat to remove batch effects from RNA Seq data
rnaseq combat written 3.1 years ago by kerrypop20 • updated 3.1 years ago by polemiraza60
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What problem does the MA plot diagnose? And how do you solve it?
rnaseq deseq deseq2 written 2.7 years ago by ysdel40 • updated 2.7 years ago by Ryan C. Thompson7.4k
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