0
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3
answers
624
views
3
answers
0
votes
2
answers
1.5k
views
2
answers
2
votes
2
answers
195
views
2
answers
3
votes
2
answers
71
views
2
answers
WGCNA following salmon/DESeq2
deseq2 wgcna salmon written 14 days ago by maya.kappil0 • updated 14 days ago by Peter Langfelder1.6k
5
votes
1
answer
1.9k
views
7 follow
1
answer
Trouble with Tximport
salmon tximport written 2.6 years ago by smithng121530 • updated 2.6 years ago by Michael Love20k
1
vote
1
answer
417
views
1
answer
0
votes
1
answer
526
views
1
answer
How to filter tximport output for edgeR?
edger rna-seq salmon tximport written 2.2 years ago by Peter0 • updated 2.2 years ago by Michael Love20k
7
votes
1
answer
1.0k
views
6 follow
1
answer
2
votes
1
answer
909
views
1
answer
tximport - using hg38 with RefSeq (NM) and Gene Symbol
salmon hg38 tximport tx2gene.csv written 21 months ago by seb.boegel0 • updated 21 months ago by Michael Love20k
0
votes
1
answer
814
views
1
answer
tximport error reading salmon quantification files...
salmon tximport written 21 months ago by nschurch10 • updated 21 months ago by James W. MacDonald48k
0
votes
1
answer
482
views
1
answer
salmon quantification - identical transcripts in fasta file
salmon written 20 months ago by dmr21020 • updated 20 months ago by James W. MacDonald48k
1
vote
1
answer
814
views
1
answer
1
vote
1
answer
806
views
1
answer
tximport using for data generated from other tools
salmon tximport express written 18 months ago by saumya.kumar0 • updated 7 months ago by Michael Love20k
2
votes
1
answer
1.1k
views
1
answer
1
vote
1
answer
426
views
1
answer
1
vote
1
answer
415
views
1
answer
tximport error with salmon version
deseq2 salmon tximport written 17 months ago by agetzler0 • updated 17 months ago by Michael Love20k
1
vote
1
answer
361
views
1
answer
1
vote
1
answer
349
views
1
answer
scater/scran with TPMs from Salmon - counts?
salmon scran scater written 10 months ago by nk0 • updated 10 months ago by Aaron Lun21k
5
votes
1
answer
517
views
1
answer
5
votes
1
answer
1.4k
views
1
answer
0
votes
1
answer
242
views
1
answer
use tximport's countsFromAbundance when using DESeq2
rnaseq normalization deseq2 salmon tximport written 9 months ago by ginlucks0 • updated 9 months ago by Michael Love20k
0
votes
1
answer
183
views
1
answer
tximport error with Salmon in DESeq2 pipeline
deseq2 salmon tximport written 9 months ago by seyfim0 • updated 9 months ago by Michael Love20k
1
vote
1
answer
242
views
1
answer
processing of (salmon) gene counts for eqtl analysis
tmm salmon gene length tximport eqtl written 7 months ago by VSM120 • updated 7 months ago by Michael Love20k
0
votes
1
answer
131
views
1
answer
Handling diploid vs haploid reference genomes in salmon > DESeq2 analysis
deseq2 salmon written 7 months ago by andrewpountain0 • updated 7 months ago by Martin Morgan ♦♦ 22k
1
vote
1
answer
162
views
1
answer
Controlling for batch after Salmon-Tximport
deseq2 wgcna rna-seq salmon written 7 months ago by mad6kj0 • updated 7 months ago by James W. MacDonald48k
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