5
votes
1
answer
1.7k
views
7 follow
1
answer
Trouble with Tximport
salmon tximport written 2.5 years ago by smithng121530 • updated 2.5 years ago by Michael Love19k
7
votes
1
answer
947
views
6 follow
1
answer
0
votes
0
answers
1.2k
views
0
answers
1
vote
1
answer
385
views
1
answer
0
votes
1
answer
479
views
1
answer
How to filter tximport output for edgeR?
edger rna-seq salmon tximport written 2.0 years ago by Peter0 • updated 2.0 years ago by Michael Love19k
2
votes
1
answer
792
views
1
answer
tximport - using hg38 with RefSeq (NM) and Gene Symbol
salmon hg38 tximport tx2gene.csv written 19 months ago by seb.boegel0 • updated 19 months ago by Michael Love19k
0
votes
1
answer
745
views
1
answer
tximport error reading salmon quantification files...
salmon tximport written 19 months ago by nschurch10 • updated 19 months ago by James W. MacDonald48k
0
votes
1
answer
447
views
1
answer
salmon quantification - identical transcripts in fasta file
salmon written 18 months ago by dmr21020 • updated 18 months ago by James W. MacDonald48k
1
vote
1
answer
722
views
1
answer
1
vote
1
answer
689
views
1
answer
tximport using for data generated from other tools
salmon tximport express written 16 months ago by saumya.kumar0 • updated 5 months ago by Michael Love19k
0
votes
2
answers
1.4k
views
2
answers
2
votes
1
answer
954
views
1
answer
1
vote
0
answers
641
views
0
answers
1
vote
1
answer
375
views
1
answer
1
vote
1
answer
371
views
1
answer
tximport error with salmon version
deseq2 salmon tximport written 15 months ago by agetzler0 • updated 15 months ago by Michael Love19k
0
votes
3
answers
590
views
3
answers
1
vote
1
answer
316
views
1
answer
3
votes
0
answers
467
views
0
answers
1
vote
1
answer
298
views
1
answer
scater/scran with TPMs from Salmon - counts?
salmon scran scater written 9 months ago by nk0 • updated 9 months ago by Aaron Lun21k
5
votes
1
answer
378
views
1
answer
5
votes
1
answer
999
views
1
answer
0
votes
1
answer
185
views
1
answer
use tximport's countsFromAbundance when using DESeq2
rnaseq normalization deseq2 salmon tximport written 7 months ago by ginlucks0 • updated 7 months ago by Michael Love19k
0
votes
1
answer
150
views
1
answer
tximport error with Salmon in DESeq2 pipeline
deseq2 salmon tximport written 7 months ago by seyfim0 • updated 7 months ago by Michael Love19k
1
vote
1
answer
196
views
1
answer
processing of (salmon) gene counts for eqtl analysis
tmm salmon gene length tximport eqtl written 5 months ago by VSM120 • updated 5 months ago by Michael Love19k
0
votes
1
answer
109
views
1
answer
Handling diploid vs haploid reference genomes in salmon > DESeq2 analysis
deseq2 salmon written 5 months ago by andrewpountain0 • updated 5 months ago by Martin Morgan ♦♦ 22k
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