2
votes
1
answer
79
views
1
answer
3
votes
2
answers
72
views
2
answers
WGCNA following salmon/DESeq2
deseq2 wgcna salmon written 15 days ago by maya.kappil0 • updated 15 days ago by Peter Langfelder1.6k
1
vote
1
answer
55
views
1
answer
DEseq2 with different fastq read numbers after salmon
deseq2 salmon salmon rna seq written 20 days ago by danalvoronov10 • updated 19 days ago by Michael Love20k
0
votes
0
answers
56
views
0
answers
1
vote
1
answer
71
views
1
answer
2
votes
1
answer
198
views
1
answer
2
votes
2
answers
198
views
2
answers
0
votes
1
answer
215
views
1
answer
1
vote
1
answer
163
views
1
answer
Controlling for batch after Salmon-Tximport
deseq2 wgcna rna-seq salmon written 7 months ago by mad6kj0 • updated 7 months ago by James W. MacDonald48k
0
votes
1
answer
132
views
1
answer
Handling diploid vs haploid reference genomes in salmon > DESeq2 analysis
deseq2 salmon written 7 months ago by andrewpountain0 • updated 7 months ago by Martin Morgan ♦♦ 22k
1
vote
1
answer
244
views
1
answer
processing of (salmon) gene counts for eqtl analysis
tmm salmon gene length tximport eqtl written 7 months ago by VSM120 • updated 7 months ago by Michael Love20k
0
votes
1
answer
184
views
1
answer
tximport error with Salmon in DESeq2 pipeline
deseq2 salmon tximport written 9 months ago by seyfim0 • updated 9 months ago by Michael Love20k
0
votes
1
answer
243
views
1
answer
use tximport's countsFromAbundance when using DESeq2
rnaseq normalization deseq2 salmon tximport written 9 months ago by ginlucks0 • updated 9 months ago by Michael Love20k
5
votes
1
answer
1.4k
views
1
answer
5
votes
1
answer
522
views
1
answer
1
vote
1
answer
350
views
1
answer
scater/scran with TPMs from Salmon - counts?
salmon scran scater written 11 months ago by nk0 • updated 11 months ago by Aaron Lun21k
3
votes
0
answers
575
views
0
answers
1
vote
1
answer
363
views
1
answer
0
votes
3
answers
626
views
3
answers
1
vote
1
answer
416
views
1
answer
tximport error with salmon version
deseq2 salmon tximport written 17 months ago by agetzler0 • updated 17 months ago by Michael Love20k
1
vote
1
answer
428
views
1
answer
1
vote
0
answers
712
views
0
answers
2
votes
1
answer
1.1k
views
1
answer
0
votes
2
answers
1.5k
views
2
answers
1
vote
1
answer
809
views
1
answer
tximport using for data generated from other tools
salmon tximport express written 18 months ago by saumya.kumar0 • updated 7 months ago by Michael Love20k
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