2
votes
1
answer
133
views
1
answer
2
votes
2
answers
150
views
2
answers
0
votes
1
answer
136
views
1
answer
1
vote
1
answer
124
views
1
answer
Controlling for batch after Salmon-Tximport
deseq2 wgcna rna-seq salmon written 4 months ago by mad6kj0 • updated 4 months ago by James W. MacDonald47k
0
votes
1
answer
94
views
1
answer
Handling diploid vs haploid reference genomes in salmon > DESeq2 analysis
deseq2 salmon written 4 months ago by andrewpountain0 • updated 4 months ago by Martin Morgan ♦♦ 22k
1
vote
1
answer
174
views
1
answer
processing of (salmon) gene counts for eqtl analysis
tmm salmon gene length tximport eqtl written 4 months ago by VSM120 • updated 4 months ago by Michael Love19k
0
votes
1
answer
133
views
1
answer
tximport error with Salmon in DESeq2 pipeline
deseq2 salmon tximport written 6 months ago by seyfim0 • updated 6 months ago by Michael Love19k
0
votes
1
answer
160
views
1
answer
use tximport's countsFromAbundance when using DESeq2
rnaseq normalization deseq2 salmon tximport written 6 months ago by ginlucks0 • updated 6 months ago by Michael Love19k
5
votes
1
answer
756
views
1
answer
5
votes
1
answer
324
views
1
answer
1
vote
1
answer
282
views
1
answer
scater/scran with TPMs from Salmon - counts?
salmon scran scater written 8 months ago by nk0 • updated 8 months ago by Aaron Lun21k
3
votes
0
answers
437
views
0
answers
1
vote
1
answer
296
views
1
answer
0
votes
3
answers
573
views
3
answers
1
vote
1
answer
356
views
1
answer
tximport error with salmon version
deseq2 salmon tximport written 14 months ago by agetzler0 • updated 14 months ago by Michael Love19k
1
vote
1
answer
351
views
1
answer
1
vote
0
answers
605
views
0
answers
2
votes
1
answer
892
views
1
answer
0
votes
2
answers
1.3k
views
2
answers
1
vote
1
answer
642
views
1
answer
tximport using for data generated from other tools
salmon tximport express written 15 months ago by saumya.kumar0 • updated 4 months ago by Michael Love19k
1
vote
1
answer
669
views
1
answer
0
votes
1
answer
429
views
1
answer
salmon quantification - identical transcripts in fasta file
salmon written 17 months ago by dmr21020 • updated 17 months ago by James W. MacDonald47k
0
votes
1
answer
720
views
1
answer
tximport error reading salmon quantification files...
salmon tximport written 18 months ago by nschurch10 • updated 18 months ago by James W. MacDonald47k
2
votes
1
answer
747
views
1
answer
tximport - using hg38 with RefSeq (NM) and Gene Symbol
salmon hg38 tximport tx2gene.csv written 18 months ago by seb.boegel0 • updated 18 months ago by Michael Love19k
7
votes
1
answer
900
views
6 follow
1
answer
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