2
votes
2
answers
91
views
2
answers
0
votes
1
answer
76
views
1
answer
1
vote
1
answer
72
views
1
answer
Controlling for batch after Salmon-Tximport
deseq2 wgcna rna-seq salmon written 5 weeks ago by mad6kj0 • updated 5 weeks ago by James W. MacDonald46k
0
votes
1
answer
64
views
1
answer
1
vote
1
answer
116
views
1
answer
processing of (salmon) gene counts for eqtl analysis
tmm salmon gene length tximport eqtl written 8 weeks ago by VSM120 • updated 8 weeks ago by Michael Love18k
0
votes
1
answer
83
views
1
answer
tximport error with Salmon in DESeq2 pipeline
deseq2 salmon tximport written 3 months ago by seyfim0 • updated 3 months ago by Michael Love18k
0
votes
1
answer
107
views
1
answer
use tximport's countsFromAbundance when using DESeq2
rnaseq normalization deseq2 salmon tximport written 3 months ago by ginlucks0 • updated 3 months ago by Michael Love18k
3
votes
1
answer
367
views
1
answer
5
votes
1
answer
182
views
1
answer
1
vote
1
answer
216
views
1
answer
scater/scran with TPMs from Salmon - counts?
salmon scran scater written 5 months ago by nk0 • updated 5 months ago by Aaron Lun19k
3
votes
0
answers
333
views
0
answers
1
vote
1
answer
247
views
1
answer
0
votes
3
answers
536
views
3
answers
1
vote
1
answer
287
views
1
answer
tximport error with salmon version
deseq2 salmon tximport written 11 months ago by agetzler0 • updated 11 months ago by Michael Love18k
1
vote
1
answer
294
views
1
answer
1
vote
0
answers
527
views
0
answers
2
votes
1
answer
755
views
1
answer
0
votes
2
answers
1.1k
views
2
answers
1
vote
1
answer
489
views
1
answer
tximport using for data generated from other tools
salmon tximport express written 12 months ago by saumya.kumar0 • updated 6 weeks ago by Michael Love18k
1
vote
1
answer
567
views
1
answer
0
votes
1
answer
389
views
1
answer
salmon quantification - identical transcripts in fasta file
salmon written 14 months ago by dmr21020 • updated 14 months ago by James W. MacDonald46k
0
votes
1
answer
607
views
1
answer
tximport error reading salmon quantification files...
salmon tximport written 15 months ago by nschurch10 • updated 15 months ago by James W. MacDonald46k
2
votes
1
answer
633
views
1
answer
tximport - using hg38 with RefSeq (NM) and Gene Symbol
salmon hg38 tximport tx2gene.csv written 15 months ago by seb.boegel0 • updated 15 months ago by Michael Love18k
7
votes
1
answer
785
views
6 follow
1
answer
0
votes
1
answer
413
views
1
answer
How to filter tximport output for edgeR?
edger rna-seq salmon tximport written 20 months ago by Peter0 • updated 20 months ago by Michael Love18k
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