2
votes
1
answer
159
views
1
answer
2
votes
2
answers
164
views
2
answers
0
votes
1
answer
160
views
1
answer
1
vote
1
answer
136
views
1
answer
Controlling for batch after Salmon-Tximport
deseq2 wgcna rna-seq salmon written 5 months ago by mad6kj0 • updated 5 months ago by James W. MacDonald48k
0
votes
1
answer
110
views
1
answer
Handling diploid vs haploid reference genomes in salmon > DESeq2 analysis
deseq2 salmon written 5 months ago by andrewpountain0 • updated 5 months ago by Martin Morgan ♦♦ 22k
1
vote
1
answer
697
views
1
answer
tximport using for data generated from other tools
salmon tximport express written 16 months ago by saumya.kumar0 • updated 5 months ago by Michael Love19k
1
vote
1
answer
199
views
1
answer
processing of (salmon) gene counts for eqtl analysis
tmm salmon gene length tximport eqtl written 6 months ago by VSM120 • updated 5 months ago by Michael Love19k
0
votes
1
answer
154
views
1
answer
tximport error with Salmon in DESeq2 pipeline
deseq2 salmon tximport written 7 months ago by seyfim0 • updated 7 months ago by Michael Love19k
0
votes
1
answer
188
views
1
answer
use tximport's countsFromAbundance when using DESeq2
rnaseq normalization deseq2 salmon tximport written 7 months ago by ginlucks0 • updated 7 months ago by Michael Love19k
5
votes
1
answer
1.0k
views
1
answer
5
votes
1
answer
392
views
1
answer
1
vote
1
answer
302
views
1
answer
scater/scran with TPMs from Salmon - counts?
salmon scran scater written 9 months ago by nk0 • updated 9 months ago by Aaron Lun21k
3
votes
0
answers
479
views
0
answers
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