5
votes
1
answer
1.7k
views
7 follow
1
answer
Trouble with Tximport
salmon tximport written 2.5 years ago by smithng121530 • updated 2.5 years ago by Michael Love19k
0
votes
2
answers
1.4k
views
2
answers
0
votes
0
answers
1.2k
views
0
answers
5
votes
1
answer
1.1k
views
1
answer
2
votes
1
answer
968
views
1
answer
7
votes
1
answer
956
views
6 follow
1
answer
2
votes
1
answer
811
views
1
answer
tximport - using hg38 with RefSeq (NM) and Gene Symbol
salmon hg38 tximport tx2gene.csv written 19 months ago by seb.boegel0 • updated 19 months ago by Michael Love19k
0
votes
1
answer
752
views
1
answer
tximport error reading salmon quantification files...
salmon tximport written 19 months ago by nschurch10 • updated 19 months ago by James W. MacDonald48k
1
vote
1
answer
735
views
1
answer
1
vote
1
answer
699
views
1
answer
tximport using for data generated from other tools
salmon tximport express written 16 months ago by saumya.kumar0 • updated 5 months ago by Michael Love19k
1
vote
0
answers
650
views
0
answers
0
votes
3
answers
595
views
3
answers
0
votes
1
answer
485
views
1
answer
How to filter tximport output for edgeR?
edger rna-seq salmon tximport written 2.0 years ago by Peter0 • updated 2.0 years ago by Michael Love19k
3
votes
0
answers
483
views
0
answers
0
votes
1
answer
451
views
1
answer
salmon quantification - identical transcripts in fasta file
salmon written 18 months ago by dmr21020 • updated 18 months ago by James W. MacDonald48k
5
votes
1
answer
395
views
1
answer
1
vote
1
answer
392
views
1
answer
1
vote
1
answer
386
views
1
answer
1
vote
1
answer
379
views
1
answer
tximport error with salmon version
deseq2 salmon tximport written 15 months ago by agetzler0 • updated 15 months ago by Michael Love19k
1
vote
1
answer
319
views
1
answer
1
vote
1
answer
303
views
1
answer
scater/scran with TPMs from Salmon - counts?
salmon scran scater written 9 months ago by nk0 • updated 9 months ago by Aaron Lun21k
1
vote
1
answer
202
views
1
answer
processing of (salmon) gene counts for eqtl analysis
tmm salmon gene length tximport eqtl written 6 months ago by VSM120 • updated 6 months ago by Michael Love19k
0
votes
1
answer
188
views
1
answer
use tximport's countsFromAbundance when using DESeq2
rnaseq normalization deseq2 salmon tximport written 7 months ago by ginlucks0 • updated 7 months ago by Michael Love19k
2
votes
2
answers
164
views
2
answers
0
votes
1
answer
162
views
1
answer
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