5
votes
1
answer
1.5k
views
7 follow
1
answer
Trouble with Tximport
salmon tximport written 2.2 years ago by smithng121530 • updated 2.2 years ago by Michael Love18k
0
votes
2
answers
1.1k
views
2
answers
0
votes
0
answers
1.1k
views
0
answers
7
votes
1
answer
825
views
6 follow
1
answer
2
votes
1
answer
802
views
1
answer
2
votes
1
answer
661
views
1
answer
tximport - using hg38 with RefSeq (NM) and Gene Symbol
salmon hg38 tximport tx2gene.csv written 16 months ago by seb.boegel0 • updated 16 months ago by Michael Love18k
0
votes
1
answer
638
views
1
answer
tximport error reading salmon quantification files...
salmon tximport written 16 months ago by nschurch10 • updated 16 months ago by James W. MacDonald46k
1
vote
1
answer
593
views
1
answer
0
votes
3
answers
548
views
3
answers
1
vote
0
answers
546
views
0
answers
1
vote
1
answer
539
views
1
answer
tximport using for data generated from other tools
salmon tximport express written 13 months ago by saumya.kumar0 • updated 9 weeks ago by Michael Love18k
4
votes
1
answer
450
views
1
answer
0
votes
1
answer
428
views
1
answer
How to filter tximport output for edgeR?
edger rna-seq salmon tximport written 21 months ago by Peter0 • updated 21 months ago by Michael Love18k
0
votes
1
answer
395
views
1
answer
salmon quantification - identical transcripts in fasta file
salmon written 15 months ago by dmr21020 • updated 15 months ago by James W. MacDonald46k
3
votes
0
answers
356
views
0
answers
1
vote
1
answer
355
views
1
answer
1
vote
1
answer
311
views
1
answer
1
vote
1
answer
311
views
1
answer
tximport error with salmon version
deseq2 salmon tximport written 12 months ago by agetzler0 • updated 12 months ago by Michael Love18k
1
vote
1
answer
256
views
1
answer
1
vote
1
answer
231
views
1
answer
scater/scran with TPMs from Salmon - counts?
salmon scran scater written 6 months ago by nk0 • updated 6 months ago by Aaron Lun20k
5
votes
1
answer
210
views
1
answer
1
vote
1
answer
130
views
1
answer
processing of (salmon) gene counts for eqtl analysis
tmm salmon gene length tximport eqtl written 12 weeks ago by VSM120 • updated 11 weeks ago by Michael Love18k
0
votes
1
answer
123
views
1
answer
use tximport's countsFromAbundance when using DESeq2
rnaseq normalization deseq2 salmon tximport written 4 months ago by ginlucks0 • updated 4 months ago by Michael Love18k
2
votes
2
answers
106
views
2
answers
0
votes
1
answer
102
views
1
answer
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