Showing: salmonreset
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WGCNA following salmon/DESeq2
deseq2 wgcna salmon written 7 months ago by maya.kappil10 • updated 7 months ago by Peter Langfelder2.1k
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Trouble with Tximport
salmon tximport written 3.2 years ago by smithng121530 • updated 3.2 years ago by Michael Love24k
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How to filter tximport output for edgeR?
edger rna-seq salmon tximport written 2.8 years ago by Peter0 • updated 2.8 years ago by Michael Love24k
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tximport - using hg38 with RefSeq (NM) and Gene Symbol
salmon hg38 tximport tx2gene.csv written 2.4 years ago by seb.boegel0 • updated 2.4 years ago by Michael Love24k
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tximport error reading salmon quantification files...
salmon tximport written 2.4 years ago by nschurch10 • updated 2.4 years ago by James W. MacDonald50k
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salmon quantification - identical transcripts in fasta file
salmon written 2.3 years ago by dmr21020 • updated 2.3 years ago by James W. MacDonald50k
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tximport using for data generated from other tools
salmon tximport express written 2.1 years ago by saumya.kumar0 • updated 14 months ago by Michael Love24k
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tximport error with salmon version
deseq2 salmon tximport written 2.0 years ago by agetzler0 • updated 2.0 years ago by Michael Love24k
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scater/scran with TPMs from Salmon - counts?
salmon scran scater written 18 months ago by nk0 • updated 18 months ago by Aaron Lun24k
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use tximport's countsFromAbundance when using DESeq2
rnaseq normalization deseq2 salmon tximport written 16 months ago by ginlucks0 • updated 16 months ago by Michael Love24k
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tximport error with Salmon in DESeq2 pipeline
deseq2 salmon tximport written 16 months ago by seyfim0 • updated 16 months ago by Michael Love24k
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processing of (salmon) gene counts for eqtl analysis
tmm salmon gene length tximport eqtl written 15 months ago by VSM120 • updated 15 months ago by Michael Love24k
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Handling diploid vs haploid reference genomes in salmon > DESeq2 analysis
deseq2 salmon written 14 months ago by andrewpountain0 • updated 14 months ago by Martin Morgan ♦♦ 23k
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Controlling for batch after Salmon-Tximport
deseq2 wgcna rna-seq salmon written 14 months ago by mad6kj0 • updated 14 months ago by James W. MacDonald50k
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