Showing: salmonreset
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Trouble with Tximport
salmon tximport written 3.2 years ago by smithng121530 • updated 3.2 years ago by Michael Love24k
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How to filter tximport output for edgeR?
edger rna-seq salmon tximport written 2.8 years ago by Peter0 • updated 2.8 years ago by Michael Love24k
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tximport - using hg38 with RefSeq (NM) and Gene Symbol
salmon hg38 tximport tx2gene.csv written 2.4 years ago by seb.boegel0 • updated 2.4 years ago by Michael Love24k
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tximport using for data generated from other tools
salmon tximport express written 2.1 years ago by saumya.kumar0 • updated 14 months ago by Michael Love24k
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tximport error with salmon version
deseq2 salmon tximport written 24 months ago by agetzler0 • updated 24 months ago by Michael Love24k
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rnaseqDTU log2fold change DEXSeq
dexseq salmon dtu rnaseqdtu foldchange written 6 months ago by fiona.dick9110 • updated 11 weeks ago by Michael Love24k
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tximport error reading salmon quantification files...
salmon tximport written 2.3 years ago by nschurch10 • updated 2.3 years ago by James W. MacDonald50k
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salmon quantification - identical transcripts in fasta file
salmon written 2.3 years ago by dmr21020 • updated 2.3 years ago by James W. MacDonald50k
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scater/scran with TPMs from Salmon - counts?
salmon scran scater written 18 months ago by nk0 • updated 18 months ago by Aaron Lun24k
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use tximport's countsFromAbundance when using DESeq2
rnaseq normalization deseq2 salmon tximport written 16 months ago by ginlucks0 • updated 16 months ago by Michael Love24k
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